Aurantiacibacter atlanticus: CP97_14928
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Entry
CP97_14928 CDS
T03997
Name
(GenBank) hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ery
Aurantiacibacter atlanticus
Pathway
ery03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ery00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
CP97_14928
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ery03400
]
CP97_14928
Enzymes [BR:
ery01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
CP97_14928
DNA repair and recombination proteins [BR:
ery03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
CP97_14928
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ANC50617
UniProt:
A0A160HUG2
LinkDB
All DBs
Position
unnamed:65517..68036
Genome browser
AA seq
839 aa
AA seq
DB search
MSPPADPLSEYNARRDFAKTPEPAGKAMKGGGGNLFIVQKHDATRLHWDLRLEFDGVLKS
WAVTKGPSPDPDVKRLAVRTEDHPMSYAEFEGTIPKGEYGGGTVMLWDRGTWSPVEGKSA
RDLDKGHLHFRLEGERMRGEWLLIRLKPRGNEKRENWLLRKLQDEHAETGDALVERELTS
VLTGRSMAEIAADKGGEFPLAGKKDDAFLAQMAKASAHNTRKAKARRKPKDAPLPKFRKP
QLATLVDQVPTGNGWMHEIKFDGYRALVAAKGKQVRVHTRRGKDWTDKFGPLVDAVAALD
LPSCLIDGEIVAVDAKGNPDFSTLQGMLKRGHGSQSQGDALQFHAFDLLELAGEDLAALP
NIERKERLEALLGTAEPPVFVADHVIGAGEKLYRSMCDAGQEGIISKTVDGRYSGRRGRS
WVKAKCTRRQEFVIIGWKASSAKRRPFSSLLMAQHEGGELVYKGNVGTGFSSDDLDALAA
KLKRIERKTPPAEVDKASSRGVTWVTPQLVAEVAFSEFTGDGNIRHGSYLGLRGDKQASE
VRPERAAAAPAPKGEVKISSRDRVIFPDSGQTKGALADYYTAIAPAMLPFAANRPLSLVR
CPQGRAKKCFFQKHDSGAFGDAVQHVPITEKNGGTEDYLYIENVRGILQCVQMGTIEFHG
WGVRSSNVEAPDRMVFDLDPDEGLDFGDVKQAARDIRDRLSDMGLVSFAMLSGGKGVHVV
VPLTPDHSWEAHKDFARRFAEALSMAEPERFTATMSKAKRKGKIFIDWLRNQRGSTAVVP
YSARARSGATVAVPIGWNELKDMADAHPFSIDDSKLLGDRAESKTLAGWGFAEQSLPDV
NT seq
2520 nt
NT seq
+upstream
nt +downstream
nt
atgagcccgcctgccgatccactttccgaatacaatgcccgtcgcgacttcgcgaagacg
cccgagccggccggcaaggcgatgaaaggtggcgggggcaacctctttatcgtgcaaaag
cacgatgccacccggcttcactgggacttgcggctggaattcgatggcgtgctcaagagc
tgggccgtcaccaaggggccttccccggatcccgacgtcaagcggctggcggtccgcacc
gaggatcatcctatgtcctatgccgagttcgagggcacgatccccaagggtgaatacggc
ggcggcacggtcatgctgtgggatcgcggcacctggtcgccggtcgaaggcaagagcgcg
agggatctggacaaggggcatctccactttcgcctcgaaggcgagagaatgcgcggcgaa
tggctgctgatccgattgaagccgcgcggcaatgagaagcgcgagaactggctcctgcgc
aagctgcaggacgagcatgccgaaacgggcgacgcgctggtggagcgcgaactcaccagc
gtcctcacgggccggtcgatggcggaaatcgcagctgacaaaggcggcgagtttccgctg
gccggcaagaaggacgatgcgttcctcgcgcaaatggccaaggcttcggctcacaatacc
aggaaggcgaaggcgcgccggaagccaaaggacgcgccgctgccgaagtttcgcaagccg
caactggcgacgctggtcgaccaggtgccgaccggcaatggctggatgcacgagatcaag
ttcgacggctaccgcgccttggtcgccgcaaagggaaagcaggtgcgcgtccatacccgc
cgcggcaaggactggaccgacaagttcggccccctcgtcgatgccgttgctgcattagat
ttgcccagctgcctgatcgacggggaaatcgtggcggtggatgccaagggcaatcccgat
ttttcaaccctgcaaggtatgctcaagcgcggccatggcagccagtcgcagggtgatgca
ctgcagttccacgccttcgacctgctggaactggcgggagaggatctggccgccctgccc
aatatcgagcgcaaggaacggctcgaggcgctgctcggcacggcagagccaccggtgttc
gtggccgatcacgtgatcggtgcaggcgagaagctgtaccgttcgatgtgcgacgccggc
caggaaggcatcatctccaagacggtcgacgggcgctattctgggcggcgcgggcgcagc
tgggtgaaagcgaaatgtacccggcggcaagagttcgtcatcatcggctggaaggcttca
agcgcgaagagacgaccgttctcctcgctgctgatggcgcagcacgagggaggcgaactg
gtctataagggcaatgtcggcaccggcttttccagtgacgacctcgacgcgctggcggca
aagctgaagcggatcgagcgcaagaccccgccggccgaagtcgacaaggcaagcagccgg
ggcgtgacctgggtgacgccgcaactcgtcgccgaggtggccttctccgaatttaccggg
gacggcaatatccggcacggcagttacctcgggctgcgcggcgacaagcaggcgagcgaa
gtaaggccagagcgcgctgcagcggcgcccgcaccaaaaggcgaggtgaagatcagtagc
cgggacagggtgatctttcccgacagcggccagaccaagggcgcgctggcggactattac
accgctatcgcccctgccatgctgcccttcgccgccaaccgcccgctcagcctggtgcgc
tgcccgcaggggcgggcgaagaagtgctttttccagaagcacgacagcggtgctttcggc
gatgcagtgcagcatgttcccatcacggaaaagaacggcgggaccgaggattatctctat
atcgaaaacgtccgcggcatcctgcaatgcgtacagatgggcacgatagagtttcacggc
tggggcgtccgaagtagcaatgtagaagcgcccgaccggatggtcttcgaccttgacccc
gatgaggggctcgacttcggcgacgtcaagcaagccgcgcgcgacatccgcgatcggctc
tccgacatgggactggtcagcttcgccatgctgtcgggaggcaagggcgtgcacgtggtc
gtcccgctcactcccgaccactcgtgggaagcgcacaaggacttcgcccgccgcttcgcc
gaagccctgagcatggccgagcccgagcggttcactgcaaccatgagcaaggccaagcgc
aaggggaagatttttatcgactggctgcgcaatcagcgcggcagcacggcggtggtgccc
tattctgctcgtgcccgcagcggcgccaccgtggctgttccgatcggctggaatgagctc
aaggacatggccgacgcccaccccttcagcatcgatgattccaaacttttgggcgatcgc
gcagagagcaagaccttggccggctggggctttgccgagcaatccctgcccgacgtatga
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