Etheostoma spectabile (orangethroat darter): 116670042
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Entry
116670042 CDS
T08457
Name
(RefSeq) histone deacetylase 1 isoform X1
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp03082
ATP-dependent chromatin remodeling
esp03083
Polycomb repressive complex
esp04110
Cell cycle
esp04330
Notch signaling pathway
esp04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
116670042
03083 Polycomb repressive complex
116670042
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
116670042
04350 TGF-beta signaling pathway
116670042
09140 Cellular Processes
09143 Cell growth and death
04110 Cell cycle
116670042
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
esp03036
]
116670042
Enzymes [BR:
esp01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
116670042
Chromosome and associated proteins [BR:
esp03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
116670042
HDAC complexes
Sin3A-HDAC complex
116670042
BRAF-HDAC complex
116670042
REST complex
116670042
SHIP complex
116670042
MiDAC complex
116670042
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
116670042
Heterochromatin formation proteins
Other heterochromatin formation proteins
116670042
Chromatin remodeling factors
NuRD complex
116670042
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
116670042
NCBI-ProteinID:
XP_032356184
LinkDB
All DBs
Position
20:complement(14049300..14054064)
Genome browser
AA seq
490 aa
AA seq
DB search
MALTSQGTKKKVCYYYDGDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIYRPHKA
SGEEMTKYHSDDYIKFLRSIRPDNMSEYSKQMQRFNVGEDCPVFDGLFEFCQLSGGGSVA
GAVKLNKQQTDIAINWAGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHH
GDGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYAVNYPLRDGIDDESYEA
IFKPIMAKVMEMYQPSAVVLQCGADSLSGDRLGCFNLTIKGHAKCVEYMKSFNLPLLMLG
GGGYTIRNVARCWTYETAVALDTSIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTNDYL
EKIKQRLFENLRMLPHAPGVQMQAIPEDAVQEDSGDEEEDDPNKRISIRAHDKRIACEEE
FSDSEDEGEGGRRNAASFKKAKRVKTEGEKEVEEKEKKGEEETKEAKEEEKVPEEEKMDT
SKPKEESKTP
NT seq
1473 nt
NT seq
+upstream
nt +downstream
nt
atggcgcttacttcccaaggaacaaagaaaaaagtttgctactactatgatggggatgtt
ggaaattattactatggtcaggggcacccaatgaagccccaccgaatccgcatgactcac
aacctgttgctcaactatgggctgtacagaaaaatggagatatatcgtccacacaaagcc
agcggagaagagatgaccaagtatcacagtgatgattacatcaaattcttgcgttcaatt
cgaccagacaacatgtcagagtacagcaaacaaatgcagagatttaatgtgggggaggac
tgtccagtgtttgatggtttatttgagttctgccagctctcaggagggggctctgttgcc
ggtgcggtgaagttgaacaaacagcagacggacattgctatcaactgggctggaggcctg
catcatgccaagaagtctgaggcttctgggttttgctatgtcaacgacattgtactggct
atcctagagttattgaaataccaccagagagttctttacatagatattgacatccaccat
ggagatggtgttgaagaggccttctacaccacagaccgtgtcatgacagtgtccttccac
aagtatggagagtacttccctggaacaggcgacctgagggacattggtgctggtaagggt
aaatattatgctgtgaattacccgctgagggatgggattgacgatgagtcatatgaagcc
atattcaaacctatcatggccaaggtgatggagatgtatcaacccagtgcagtggttctg
cagtgtggagctgattcactgtcaggagacaggcttggttgctttaacctcaccattaaa
ggccatgccaagtgtgtggagtacatgaagagtttcaacctgccactgctaatgctgggt
ggaggaggctacaccatccgtaatgtggcacgctgctggacgtatgagactgctgtagcc
cttgatacatccatccccaacgagctcccttacaacgactactttgagtactttggacca
gacttcaagcttcacatcagcccctccaacatgaccaatcagaacaccaatgactacctg
gagaagataaagcagcgcttgtttgagaacttgcgtatgcttccccatgccccgggagtc
caaatgcaggccattcccgaggatgctgtacaggaagacagtggcgatgaggaggaggat
gaccccaacaaacgcatctccatccgtgcacatgacaagaggatagcgtgtgaggaggag
ttctctgactctgaagatgaaggcgagggaggccgcagaaatgcagccagcttcaagaaa
gcaaagcgagtcaaaactgaaggagaaaaagaggtggaagaaaaggagaagaaaggtgag
gaagaaacaaaagaagcaaaagaagaagagaaggtgccagaggaagagaaaatggacaca
tcaaagccaaaagaggagtccaagacaccttga
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