Echinops telfairi (small Madagascar hedgehog): 101643927
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Entry
101643927 CDS
T08707
Symbol
SNRNP40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
KO
K12857
Prp8 binding protein
Organism
etf
Echinops telfairi (small Madagascar hedgehog)
Pathway
etf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
etf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101643927 (SNRNP40)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
etf03041
]
101643927 (SNRNP40)
Spliceosome [BR:
etf03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
101643927 (SNRNP40)
Complex C
U5 SnRNP specific factors
101643927 (SNRNP40)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
NBCH_WD40
ANAPC4_WD40
eIF2A
Cytochrom_D1
PROPPIN
WDR54
WD40_like
Motif
Other DBs
NCBI-GeneID:
101643927
NCBI-ProteinID:
XP_004705086
LinkDB
All DBs
Position
Unknown
AA seq
355 aa
AA seq
DB search
MIEQQKRKGPELPLVPVKRQRHDLLLGAAGSGPGAGQQQGALLQAGPPRCSSLQAPIMLL
SGHEGEVYCCKFHPSGSTLASAGFDRLILLWNVYGDCDNYATLKGHSGAVMELHYNTDGS
MLFSASTDKTVAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIR
KKAASQTFQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLS
LSSEGSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAA
GSADRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDEPIILSASSDKRLYMGEIQ
NT seq
1068 nt
NT seq
+upstream
nt +downstream
nt
atgatcgaacagcagaagcgcaaagggccggagttacccctggtccccgtcaagcggcag
cggcatgacttgctgttgggagcggcggggtcgggccccggagcggggcagcagcagggg
gctttgctgcaagcgggccctcccaggtgctcctcccttcaagccccaatcatgctgctc
tcaggacatgaaggagaggtgtactgttgcaagtttcatcccagtgggtccaccttggcg
tcggcaggatttgaccggctgatattgctgtggaatgtctatggggactgtgataactat
gccacattgaaggggcacagtggcgccgtgatggagctgcattacaacacagacggcagt
atgctcttctcggcatccacagacaaaaccgtagctgtgtgggacagtgagacgggcgag
agagtaaaaagactgaaggggcatacttcttttgtgaattcctgctatccggccaggaga
ggtccccagcttgtgtgcactggcagtgacgacggcacagttaagctttgggacatccgt
aagaaagcagccagccagacctttcaaaacacttaccaggtgttggctgtgaccttcaat
gacacgagtgatcagattatttctggtggcatagacaatgatatcaaggtctgggacctg
cgccaaaacaagctgacctataccatgagaggccatgccgattccgtgaccggcctgagc
ttaagttctgaaggctcttacctcttgtccaatgcaatggacaatacagtgagagtctgg
gatgtccgcccatttgcccccaaggagagatgtgtgaagatctttcaaggaaacgtgcac
aattttgaaaagaatctcctgagatgctcatggtcacccgatggaagcaaaatagcagct
ggctccgccgacaggtttgtgtatgtgtgggataccacgagtagaagaatcctgtataaa
ctgcctggccacgctggctccatcaatgaagtggctttccacccggacgagcccatcatt
ctctcggcatccagtgacaagaggctgtatatgggagagattcaatga
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integrated database retrieval system
