Empidonax traillii (willow flycatcher): 114055167
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Entry
114055167 CDS
T05887
Symbol
CHD9
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 9 isoform X1
KO
K14438
chromodomain-helicase-DNA-binding protein 9 [EC:5.6.2.-]
Organism
etl
Empidonax traillii (willow flycatcher)
Brite
KEGG Orthology (KO) [BR:
etl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
etl03036
]
114055167 (CHD9)
Chromosome and associated proteins [BR:
etl03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
114055167 (CHD9)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
BRK
Helicase_C
Chromo
ResIII
DEAD
HDA2-3
Myb_DNA-bind_7
Motif
Other DBs
NCBI-GeneID:
114055167
NCBI-ProteinID:
XP_027734804
LinkDB
All DBs
Position
Unknown
AA seq
2893 aa
AA seq
DB search
MTDPMMDFFDDANLFSETLEGLSDDAFVQPGPVSLVDELNLGAEFEPLHIDSLNHVQDAQ
NQQKMSEFDQLNQYDSLKLHSVNQSFNSSADNVLSPHSQFNCSPVHPQSQSNGMFPDVAD
GSPMWGHQTATTVSNQNGSPFHQGHSQSMQQNKSFVAHHDFALFQANEPQHQCASLRSQQ
SRNNTGQDALSQPKDFMEVNVSTSLRVSVNHPPSVSNPSTSQQPLSVQQFSQTASASLHF
CGNQEGNFDGQSPTITPCSVSNSQQFSSPYSYSNNHISPTSLLQPTTALSTSQQTHSISD
FTGSDAFTSQTGTKQETTEHMLNPNTPLNSSTFQMLHSAHPQGNFSSSKLSPVNINFPAS
TGSASQISHFTDPIESNGFTSLDDNLLHQVETHNEPFTGLDPDDLLQEDLLPQFDDSAFV
QDSTSHVLEHDLEHHITPQQVTQSPDLVRAQSQSQIHPWHSSVSNQHLQGRSRVTSQGQP
PSSKKTDGSGSYTKMQNTQVRAMSEKKQKKKTDSESKQEKANRIISEAIAKAKERGERNI
PRVMSPENFPSVSAEAKEEKKGRKVKSKPKDKESKKPKTGSSSKIKEKTKIGKLIITLGK
KQKRKNESSDELSDAKQTPQRPLKDEDSQKRRSNRQVKRKKYSEEGEGKQSEEEAAKVSV
KIKKNSAPLPAEQPLQLFVENPSEEDAAIVDKILSSRVIKKEVSAGMTVDTEEFFVKYKN
YSYLHCEWATEQQLLKDKRIQQKIKRFKLRKAQRAHFFADMEEEPFNPDYVEVDRVLEVS
LCEDKDTGEPVIYYLVKWCSLPYEDSTWELKEDVDQAKIEEFEQLQASRPDSRRLDRPPP
SSWKKIEQSREYKNGNQLREYQLEGLNWLLFNWYNRRNCILADEMGLGKTIQSITFLYEI
LLTGIRGPFLIIAPLSTITNWEREFRTWTDLNVVVYHGSMISRQMIQQYEMYFRDSQGRI
VRGTYRFQAIITTFEMILGGCPELNAIEWRCVIIDEAHRLKNKNCKLLEGLKLMNLEHKV
LLTGTPLQNTVEELFSLLHFLEPLRFPAESTFMQEFGDLKTEEQVQKLQAILKPMMLRRL
KEDVEKKLAPKEETIIEVELTNIQKKYYRAILEKNFAFLSKGAGQANVPNLVNTMMELRK
CCNHPYLIKGAEEKILGEFKETYSPSAPDFHLQAMIQSAGKLVLIDKLLPKMKAGGHKVL
IFSQMVRCLDILEDYLIHKRYLYERIDGRVRGNLRQAAIDRFSKPDSDRFVFLLCTRAGG
LGINLTAADTCIIFDSDWNPQNDLQAQARCHRIGQNKAVKVYRLITRNSYEREMFDRASL
KLGLDKAVLQSMSGRENSVGGIQQLSKKEIEDLLRRGAYGAIMDEEDEGSKFCEEDIDQI
LQRRTKTITIESEGRGSTFAKASFVASGNRTDISLDDPNFWQKWAKKAEIDIDAISGRNS
LVIDTPRIRKQTRPFSATKDELAELSEVESEGEDKPKLRRPCDRSNGYGRTECFRVEKNL
LVYGWGRWREILSHGRFKRQLNEQDVEIICRALLAYCLVHYRGDEKIKSFIWDLITPTED
GQTRELQNHLGLSAPVPRGRKGKKVKTQASTFDIHKAEWLRKYNPEHLLQDEGYKKHIKH
HCNKVLLRVRMLYYLKQEVIGNEFQKVFDGTDASEIDVWVPEPDHSEVPAEWWDADADKS
LLIGVFKHGYEKYNTIRADPALCFLERVGKPDEKAVAAEQRANDYMDGDVEDPEYKPAPA
MFKDDIEDDVSSPGDLVIADGDGQMMEGDKIYWPTQSALTTRLRRLITAYQRTSKNRQAQ
QIQPAFPIQTSMMQPPYEEAALNPKMAAKIERQQRWTRREEADFYRVVSTFGVVFDPERG
RFDWTKFRAMARLHKKTDESLEKYLYAFMSMCRRVCRLPSKEELVDPNIFIQPITEERAS
RTLYRIELLRKVREQALRHPQLFERLKLCQPNPDLPVWWECGTHDRDLLIGAAKHGVSRT
DYHILRDPELSFMSAQRNYNQNKVALSRTSTPLLHQYQMALSASPLTPQSRLSDAKVNAF
EDTKAKNENLKEDPQSSEEESMSTEETQTIMKSEPLSPKNGTPIQTSDHRPGVKAETDRR
MVAARTEPLTPNPASKKQRVSKRGSDSSSDSDSDSDRSSCSSRSSSSSSSSSSSCSHSRS
GSSSSSSSSCSSASSSSSSSSSSSSSSSSSSSEESDSDEEEAQKRAEGAPHIKAYDEESV
ASLSTTQDETQDSFQMNNGTPNSTYLLQGGYMLAASYWPKDRVMINRLDSICQTVLKGKW
PSARRSYDSNTVASFYTTKLLDSSGAAADYSEPSAPTPPLAGVKEEYDQSPQMSKVKKHV
REKEFTVKINDEGGLKLTFQKQGLSQKRPFESDEGALGQQQYLARLRELQNASETSLVNF
PKSLPKSGTSSHLTASANGVIVDSQPVVKKRRGRRKNVEGVDVLFMNRNKQPNHVNPGIN
SCQVAAGINPALTYTQPQGMLDAESPVPVINLKDGTRLAGDDAPKRKDLERWLKEHPGYV
EDSGACIPRMQLHDGRPKQKRHRCRNPNKLDVNSLTGEERVQLINRRNARKVGGAFAPPL
KDLCRFLKENPEYGVAPEWGEVVKQSGFLPEGMFDRILTGPVVREEVSRRGRRPKSEIAK
ATAAAASASAASVSVNPLLANGLIPGVDLPGLQALQQNLQNLQSLQVTAGLMGMPAGLAA
GGEAKNMAAMFPMLLSGMAGLPNLLGMGGLLTKSTESISEEKKGNDSKEVDVKKERTEDQ
NTDTGGENSVSSSPSTSSAAAAANPLSLNPLLLSNILYPGMLLTPGLNLHIPALSQSNIF
DVQNSESNDTGSAKPTEEKEENSRVRDQEDKGGTEPSSHNENSTDEGSEKADASSGSDST
SSSSEDSDSSDED
NT seq
8682 nt
NT seq
+upstream
nt +downstream
nt
atgactgatcctatgatggatttttttgatgatgccaatctttttagtgagaccttagaa
ggtttgtcagatgatgcctttgttcaacctggacctgtttcacttgttgatgaattgaat
ttgggtgcagaatttgaacctttgcacatagactcattgaaccatgtgcaagatgctcaa
aatcaacaaaagatgagtgagtttgatcagctgaatcagtatgattcactgaagcttcac
tcagtaaatcagtcttttaatagctcagctgacaatgtcttatcaccacactctcaattc
aattgttcaccagttcatccgcaaagccagtccaatgggatgtttccagatgtggccgat
ggcagtcctatgtggggtcatcaaactgccacaacggtttcgaatcaaaatgggtcccct
tttcaccaaggacattctcagtctatgcagcaaaacaaaagctttgtagcacaccatgac
tttgccttatttcaggctaatgaaccacagcatcagtgtgcctcgctacggtcgcaacaa
agcagaaacaacacggggcaggatgctctgagtcagccaaaagacttcatggaagtgaac
gtatctacttctctcagagtcagtgttaaccaccctccttcggtttctaatccatcgact
tcacagcagcctctgtccgttcagcagttttctcaaactgcaagtgcttcattacatttt
tgtgggaatcaggaaggaaactttgatggacagtccccaactattactccgtgttctgtt
agtaatagtcaacaattttcatctccttattcttactctaataaccacatttctcctacc
agccttcttcagcctacaacagctctttctaccagccagcagacacactctatctctgac
ttcactggaagcgatgcctttacatctcaaacagggaccaagcaagaaacaactgagcac
atgttgaatcccaatacacctctgaattcaagtacttttcaaatgttgcattctgcgcat
cctcagggcaacttcagtagttcaaaactctctcctgtgaatattaattttccagcttcc
actggttctgcttctcagataagccatttcactgaccctattgaaagcaacggttttaca
tctttagatgacaacctacttcatcaagtcgagactcataatgaaccattcacaggactt
gacccagatgacctccttcaggaagaccttctgccacagttcgatgattctgcatttgtt
caggatagcacaagccatgttttagagcacgacctagaacaccacataaccccacagcaa
gtgacacagtcacccgatctggttcgggcacagtctcaaagtcagatccatccctggcat
tcttcagtttctaatcagcacctgcaaggcaggagtcgtgtaacctcacaaggacagcct
ccttcctctaagaagactgatggttcaggatcatatactaagatgcagaatacccaggtg
agggcaatgtctgaaaagaagcagaagaaaaaaacagactcggaaagtaaacaagagaag
gcaaatcgcataatatctgaagcaattgcaaaagcaaaagagagaggagagagaaacatt
ccacgagtaatgagccctgagaacttccccagtgtttcagctgaagcaaaagaggaaaag
aagggcagaaaagttaaatccaaaccaaaggacaaggagagcaaaaagccgaaaactggt
tcctcatccaaaattaaagagaaaacaaaaattgggaagctgatcatcacactgggtaag
aagcagaaaaggaaaaatgaatcttcagatgaattgtctgatgctaaacagactccacag
cggccattgaaagatgaagactcacagaagagaagatcaaatcgtcaagttaaaaggaaa
aaatactctgaagaaggagaagggaaacagtcagaagaagaagcagctaaagtttctgta
aaaatcaaaaagaattctgcccctttgcctgctgaacagcctttacaattatttgtggaa
aatccaagtgaagaagatgcagcaattgtagacaaaatcttatcctccagggtaataaag
aaagaagtatctgctgggatgacagtagacacagaagagttttttgtaaaatacaagaac
tactcatatctccactgtgagtgggccacagaacaacaacttttaaaggataaaagaatc
cagcagaaaataaagcgattcaaactaaggaaagcacagagagctcacttttttgcagat
atggaagaggaaccttttaatcctgactatgttgaagtagaccgggtattagaagtatct
ctttgtgaagacaaagacactggcgagcctgttatttactatttagtaaaatggtgttcg
ttgccatatgaagacagtacgtgggagctgaaagaagatgtagatcaagcaaaaatagaa
gaatttgaacaattgcaagcttccagacctgactcaaggagattggaccgaccacctcca
agctcctggaagaagatagaacagtccagggaatataaaaatggcaatcagctcagggaa
tatcaactggaaggacttaactggctcctattcaactggtacaataggcgaaattgcatt
ttagcagatgaaatgggtcttggcaaaaccatccagtccattacattcctctatgaaatc
ctcctgactggtataagggggcctttcctgatcatagctccgctttccactataacaaac
tgggaaagggaatttcgcacgtggactgacctgaatgttgtcgtgtaccatggcagtatg
atcagcaggcagatgatccagcagtatgagatgtacttcagggactcccagggccgtatt
gttcgaggtacctacaggttccaggccattatcacaacttttgaaatgattcttggtggg
tgtccagaattaaacgcgattgagtggcgctgtgttattattgatgaagctcacagactg
aagaacaaaaactgcaaactcctggaaggactaaaactaatgaaccttgagcataaagtg
ctgttaacaggtacccccctgcagaacacagtagaagaattatttagcctccttcatttc
cttgagcccctgcgttttcctgctgaatctacattcatgcaagaatttggagacctcaaa
acagaggaacaggttcagaaattacaagcaatcctgaaacccatgatgctcaggaggtta
aaggaagatgtagaaaaaaagctggctcctaaggaggaaactataattgaagtagaacta
actaatatccagaagaaatattaccgagctattttggagaaaaattttgctttcttatcc
aaaggagcagggcaagctaatgtacccaatctggttaacactatgatggaactcagaaag
tgttgtaatcacccttatctcatcaaaggtgccgaagagaagatccttggagagtttaaa
gaaacgtacagccccagtgctcctgacttccacctgcaagcaatgatccagtctgctggg
aaattggttcttattgataagcttcttccaaaaatgaaagcaggaggccacaaggtcctt
atcttctctcagatggtgcgttgccttgatattttggaggattaccttatacataaaagg
tacctgtatgaacgcattgacgggcgagtacgaggcaatctcagacaagctgccatcgac
aggttcagcaaacccgactccgatcgcttcgtcttcctcctgtgcaccagagctgggggt
ttgggcatcaacttgactgcagcagatacatgtataatttttgattctgactggaatcct
cagaatgatctgcaggctcaagcccgatgtcacaggattggccagaacaaagcagtgaag
gtttacagactgataacacggaattcctacgagagagagatgtttgacagagcaagtctg
aaactgggactggataaggctgtcctgcagagtatgagtggaagagaaaacagtgtcggt
ggtatccaacaactctccaaaaaagaaatagaagacttgcttcgaagaggtgcatatggt
gccattatggatgaagaagatgaaggctctaaattctgtgaggaggacattgaccaaatt
ctacagcgtcgtactaaaactatcaccattgagtcagaagggagaggctccacatttgcc
aaggctagttttgttgcatctggaaacaggactgatatttcactagatgaccccaacttc
tggcagaaatgggccaaaaaagcagaaatagatatcgatgccatcagtggtagaaacagc
ctggttattgatactccaagaatcaggaaacaaacacggcccttcagtgctacaaaagat
gaactggctgagttgtctgaagtggagagtgagggtgaagataaacccaaactccgcagg
ccctgtgaccgttccaacggatatggaagaaccgagtgctttcgggtggaaaagaacttg
ctggtctatgggtggggtcgatggagagaaattctgtcccacggtcgcttcaagaggcag
ctgaatgaacaggatgtggaaataatttgccgagcactattggcctattgtcttgttcac
tacagaggggatgagaaaataaaaagttttatatgggatcttattaccccaacagaggat
gggcaaacacgagagttacagaatcatcttggcttatcagcccctgtgcctagaggaaga
aaaggaaaaaaagtgaagacccaggctagcacttttgatatacacaaagcagagtggctt
cgaaaatacaatccagaacatctcttgcaagatgaaggatacaaaaagcacataaaacac
cattgtaacaaagtcttacttcgagtaagaatgctgtattacttaaaacaagaagtcatt
ggtaatgaattccaaaaggtgtttgatggaactgatgccagtgaaattgatgtttgggtc
cctgagccagatcactctgaagttcctgctgagtggtgggatgcagatgcagataaatct
cttttaattggagtttttaaacatggttatgaaaaatataacaccatcagagcagaccca
gcgctgtgcttcttggaaagggttggcaagccagatgaaaaagcagttgctgctgaacag
agagcaaatgattacatggatggggatgtagaagatccagaatataaaccagcaccagca
atgtttaaagatgacatagaggatgatgtttcatccccaggtgatctggtaatagcagat
ggagatggacaaatgatggaaggagacaaaatctattggcccactcagtctgccttaaca
acacgtctgcgccgcctcataacggcttatcaacggacaagtaaaaacaggcaggcccag
cagatccagccagcattccccatacaaactagtatgatgcagcctccatatgaagaagct
gcactaaatccaaagatggctgcgaagattgaaagacagcaaaggtggacgagaagagaa
gaagctgacttttacagagttgtgtccacgtttggagtggtgtttgatcctgaaagggga
cgatttgactggaccaagtttagggccatggctcgactgcacaagaaaactgatgagagc
ttggagaagtacttgtatgcgttcatgtcaatgtgcaggagggtctgtcggctcccctcg
aaagaagaactcgtagaccccaacatttttatccagccgattacagaggaacgtgcttct
cggaccttgtatcgcatcgaactcctgaggaaagtgagagaacaggctcttagacacccc
cagttgtttgaacgactaaaactatgccagccaaacccagacttacctgtctggtgggaa
tgtgggactcacgacagggatttacttattggagctgctaaacatggagttagcaggaca
gattatcatattcttcgtgatcctgaactctcattcatgtctgcccagaggaactataat
caaaacaaagtggcactctcaaggacttctactccactcttgcatcagtaccagatggca
ttatctgcttctcctcttacacctcagtcaagattgtcagatgctaaagtgaatgctttt
gaggacacaaaagctaaaaatgaaaatctgaaagaggaccctcagtcttctgaagaggaa
tctatgtctacagaggagacacagacaataatgaaatctgagcctttgagtcccaaaaat
ggcacaccaatacaaacctcagaccacagacctggcgtgaaggctgagacagacaggcgc
atggtggctgcaaggacagagcctctcactccaaatccagcttccaaaaaacagagagtc
agcaaaaggggatctgactctagctctgactcagactctgactcagatagatcatcctgt
tcttccaggtcatcatcttcatcctcttcatcatcctcatcttgttcacactctcgatct
ggctctagctcttcatcatcttcatcttgttcttcagcatcttcatcctcctcctcatcg
tcctcatcatcatcgtcgtcatcatcatcatcgtctgaagagagtgatagtgatgaagag
gaggcacaaaaacgtgcagaaggagctccacatataaaagcatatgatgaagagagtgtg
gcctctctcagtaccacacaagatgagacacaagacagtttccagatgaacaatgggaca
ccaaattccacttatctcctacaaggtggatacatgttggctgcatcctactggccaaag
gatcgagttatgattaatcgacttgacagcatttgtcaaacggtgctgaaaggtaaatgg
ccctcagccagaaggagctatgacagcaacacggtggcctctttctacacaaccaaactc
ctggatagttccggtgcagctgcagattacagtgagcccagtgctcccacaccccctctt
gcaggtgttaaagaagaatatgatcagtcaccacagatgtcaaaggtgaagaagcatgta
cgagaaaaggagtttacagtgaaaatcaatgacgaaggtggtttgaaattgacttttcag
aagcagggactgtctcagaaaaggccatttgaaagcgatgaaggtgcattgggtcagcag
caatatctggctcggctgcgtgaactccagaacgcttcagaaaccagccttgtcaacttc
ccaaaatcacttcccaaatcaggtacttccagtcacttaacagccagtgccaatggagtc
atagttgacagtcagcctgtagtcaaaaagagacgaggaagaaggaagaatgtggaggga
gttgatgttctctttatgaatagaaataaacagcctaatcatgttaatccaggtattaac
tcctgtcaggttgctgcaggaataaacccagcactcacttacacacagccccaaggaatg
cttgatgcagagagtccagttcctgttattaacctgaaagatggaacaaggcttgcaggt
gatgatgcccccaaaagaaaagatttagaaaggtggcttaaagaacaccctggatatgtt
gaagattcaggagcttgtattcctaggatgcagctgcacgatgggaggcccaaacaaaaa
agacaccgttgtcgaaaccctaataaactggatgttaatagtttgactggggaagaacgt
gttcaactcataaatagaagaaatgcaagaaaggtggggggtgcatttgctccccctttg
aaggatttgtgcaggttcttgaaagaaaatccagagtatggtgtggctcctgagtgggga
gaagtcgtgaaacagtctgggtttctcccggaaggaatgttcgaccgcatcctgacgggg
ccggtggtgcgggaggaggtgagccggagagggaggcgccccaagagcgagatcgccaag
gcaaccgcagctgcagcctcggcctcggccgccagcgtgtccgtgaacccgctgctggcc
aacggactgatcccgggcgtggatctgcccgggctgcaggccctacagcagaacctgcag
aacctgcagtcgctgcaagtgacagcgggattgatgggaatgccggctggccttgctgct
ggaggagaagccaagaacatggctgccatgttccccatgctcctgtcagggatggctgga
ttaccaaacctgctgggcatggggggacttctgacaaagtctacggaatccatttcggag
gagaaaaagggaaacgattccaaggaggtggatgtaaagaaagaaaggacagaggatcaa
aatacggatactggtggtgaaaactctgtttcaagttctccttcaacatcctctgctgct
gcagctgccaatcctctctctcttaaccctttacttttgtccaacatactttacccaggg
atgcttctcactccaggccttaatcttcatatcccagctttgtctcagtctaacattttt
gatgtacagaacagtgaaagcaatgacacaggctcagccaagcccacagaagaaaaggag
gaaaattctagggttagagatcaggaagacaaagggggaacagagccaagctctcacaac
gaaaacagcacagatgagggttcagagaaagcagatgcttcatctggatctgatagtaca
tcgtcttcatctgaggattcggattctagtgatgaagactga
DBGET
integrated database retrieval system
