Empidonax traillii (willow flycatcher): 114057308
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Entry
114057308 CDS
T05887
Symbol
PABPC1
Name
(RefSeq) polyadenylate-binding protein 1
KO
K13126
polyadenylate-binding protein
Organism
etl
Empidonax traillii (willow flycatcher)
Pathway
etl03015
mRNA surveillance pathway
etl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
etl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
114057308 (PABPC1)
09123 Folding, sorting and degradation
03018 RNA degradation
114057308 (PABPC1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
etl03019
]
114057308 (PABPC1)
03041 Spliceosome [BR:
etl03041
]
114057308 (PABPC1)
Messenger RNA biogenesis [BR:
etl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
114057308 (PABPC1)
mRNA cycle factors
Stress granule specific factors
114057308 (PABPC1)
Spliceosome [BR:
etl03041
]
Complex C
Other components
Complex C specific factors
114057308 (PABPC1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
PABP
RRM_7
RRM_5
RRM_occluded
RRM_3
YflT
Motif
Other DBs
NCBI-GeneID:
114057308
NCBI-ProteinID:
XP_027739192
LinkDB
All DBs
Position
Unknown
AA seq
637 aa
AA seq
DB search
MNPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFER
HEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKN
LDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT
KPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRA
AYYPTNQLAQLARPSPRWTAQGARPHPFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMST
QRVANTSTQTMGPRPAAAATAATPAVRTVPQYKYAAGVRNPQQHLNTQPQVAMQQPAVHV
QGQEPLTASMLASAPPQEQKQMLGERLFPLIQSMHPTLAGKITGMLLEIDNSELLHMLES
PESLRSKVDEAVAVLQAHQAKEAAQKAVNNPTGVPSV
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccagcgcccccagctaccccatggcctcgctctacgtgggggacctgcacccc
gacgtgaccgaggccatgctctacgagaagttcagccctgcagggcccatcctctccatc
cgcgtctgcagggacatgatcacccgccgctcgctcggctacgcctatgtcaacttccag
cagcccgccgacgctgaacgagctttggataccatgaactttgatgtcataaaaggcaaa
ccagtgcgcatcatgtggtctcagcgcgacccatctctacgcaaaagtggtgtaggaaac
atcttcatcaaaaacttggacaaatcaattgataacaaagctttgtatgacaccttttct
gcttttgggaacatcctatcttgtaaggtggtatgtgatgaaaatggatccaagggttat
ggatttgtacattttgagacacaagaagctgcagaaagagctattgaaaaaatgaatggt
atgctgcttaatgaccgcaaagtatttgttggaaggtttaaatcacgcaaggaacgtgag
gcagagcttggagccagagcaaaagaattcaccaatgtttacatcaaaaattttggagaa
gatatggatgatgagagacttaaggaactctttggcaagtttggtcctgccctaagtgtg
aaagttatgactgatgagagtggaaaatccaaaggctttggcttcgttagttttgaaaga
catgaagatgcccaaaaagccgtagatgagatgaatgggaaagagctcaacgggaaacaa
atctatgttggccgggctcagaaaaaggtggaaagacagacggagctgaagcgcaagttt
gaacaaatgaagcaggacaggatcaccagataccagggtgtaaacctttatgtgaaaaat
cttgatgatgggattgatgatgagcgtctccgaaaagaattctccccatttggtacaatt
actagtgcaaaggtcatgatggaaggtggccgcagcaaaggatttggatttgtgtgcttt
tcgtcaccagaagaagccacgaaagcagtcacagaaatgaacggtagaattgtggctact
aaaccattgtatgtagctctagcccagcgtaaagaggagcgccaagctcacctcaccaac
cagtacatgcagagaatggcgagtgtaagagcagtacctaatcctgtaatcaatccctac
cagccagcacctccttcaggttacttcatggcagctatcccacagactcagaaccgtgct
gcatactatcctactaatcagctcgctcaacttgctagacctagtcctcgctggactgct
cagggtgccagacctcatccattccaaaacatgcctggtgctatccgcccagcagcaccc
agaccaccgttcagtaccatgagaccagcttcttcacaagttccacgagtcatgtcaaca
cagcgtgttgctaatacatcaacacaaacaatgggtccacgtcctgcagcagcagctact
gcagctactcctgctgtacgcacagtaccgcagtacaaatacgctgcaggtgtccgtaat
cctcagcagcatcttaacacacagccacaggttgctatgcagcagcctgctgtccatgtg
caaggtcaggaacccttgactgcttccatgttggcttctgcccctccacaagaacaaaag
cagatgttaggtgagcgtctattccctctcattcaaagcatgcaccctactctggcgggt
aagatcactgggatgttgttggagattgacaactctgaactcctccacatgctcgagtct
cctgagtctcttcgttcgaaggttgatgaagctgtagccgtactacaagcccaccaagct
aaagaggctgctcaaaaggcagttaataatcccactggggttccaagtgtttaa
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