Empidonax traillii (willow flycatcher): 114067742
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Entry
114067742 CDS
T05887
Symbol
PABPC4
Name
(RefSeq) polyadenylate-binding protein 4
KO
K13126
polyadenylate-binding protein
Organism
etl
Empidonax traillii (willow flycatcher)
Pathway
etl03015
mRNA surveillance pathway
etl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
etl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
114067742 (PABPC4)
09123 Folding, sorting and degradation
03018 RNA degradation
114067742 (PABPC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
etl03019
]
114067742 (PABPC4)
03041 Spliceosome [BR:
etl03041
]
114067742 (PABPC4)
Messenger RNA biogenesis [BR:
etl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
114067742 (PABPC4)
mRNA cycle factors
Stress granule specific factors
114067742 (PABPC4)
Spliceosome [BR:
etl03041
]
Complex C
Other components
Complex C specific factors
114067742 (PABPC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
PABP
RRM_5
RRM_7
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
114067742
NCBI-ProteinID:
XP_027759197
LinkDB
All DBs
Position
Unknown
AA seq
629 aa
AA seq
DB search
MNTAASSYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYIKNFGDDMDDERLKELFGKYGKTLSVKVMTDPTGKSKGFGFVSFEK
HEEANKAVEEMNGKDINGKMLFVGRAQKKAERQAELKRRFEQLKQERLSRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRIAGMRALPANTIINQFQPAAGGYFMPAVPQAQSRP
TYYAPNQMTQMRPNPRWQQGGRPQGFQGMPNAMRQSGPRPALRHLAPANAPASRGLPAAA
QRVGVGTAAQNLAPRPPVAAPAPRAVPPYKYASSVRSPHPGVQPLQAPQPAVHVQGQEPL
TASMLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRS
KVEEAVAVLQAHQAKKEAAQKVGVVAATS
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgaacacggcagccagcagttaccccatggcatcgctgtacgtgggggacctgcacccc
gacatcaccgaggccatgctctacgagaagttcagccccgctggccccgtgctctccatt
cgggtctgcagggacatgatcacccgccggtccctcggctatgcctatgtcaacttccag
cagccggcagatgctgagcgagctctagataccatgaatttcgatgtgatcaaaggaaaa
cccattcgcatcatgtggtctcagagggacccttccttgaggaagtcaggggttgggaat
gtcttcattaagaatctggacaaatccattgataacaaggcactttatgacacgttctca
gcgtttggaaacattttgtcctgcaaggtggtgtgtgatgagaatggctctaagggctac
gcttttgtgcactttgagacgcaggatgctgcagatagagccatcgagaagatgaacggc
atgctgctcaacgaccgcaaagtatttgttggcagattcaagtctcgtaaggagcgggag
gctgagttgggagccaaggcaaaagaattcaccaatgtttatattaaaaacttcggggat
gacatggatgatgaaagactgaaggagctctttggcaaatatggtaaaacactgagtgtt
aaagtgatgacagaccccactggaaaatccaaaggctttggctttgtaagctttgaaaag
catgaagaagctaacaaggcagtggaagaaatgaacgggaaggatatcaatgggaaaatg
ctgtttgtgggtcgagcacagaagaaggctgagcgccaggcagagctgaagaggaggttt
gaacagctaaagcaggagagactcagccggtaccagggtgttaacctgtacattaaaaac
ctagatgacactatagatgatgaaaaactgaggaaggagttctcaccttttgggtcaata
acgagtgccaaggtgatgctggaagatggacggagcaaagggtttggctttgtctgcttt
tcctctccagaggaagccacgaaagctgtgacagagatgaacgggcggattgtgggctcc
aagccattgtatgtggcactggcacagaggaaagaggagaggaaggcccatctcacgaac
cagtacatgcagcgcatcgctgggatgagagccttgcctgccaacacaatcattaaccag
ttccagcctgctgctggggggtatttcatgcctgctgtgccccaggctcagagcagaccc
acttactatgcacccaaccaaatgacccagatgagacccaacccacgctggcagcaagga
ggaagacctcaaggcttccagggaatgccaaatgccatgcgccagtcgggaccccggcca
gccctgcgccatctggcccctgccaatgctcccgcctcccgtggcctcccagctgctgcc
cagcgagttggtgttggcacagcagcacagaatttggctccccgtccacccgtagctgcc
cctgctcccagagctgtccctccttacaaatatgcctcaagtgttcgcagcccacaccca
ggtgtccaacctctgcaggcacctcagcccgcagtacatgtgcagggccaggagccactg
acagcctccatgctggctgctgcccctccccaggagcagaaacagatgctgggagaacgt
ttgttccctctgatccaagctatgcaccccagcctcgctgggaagatcacaggaatgctg
ctagagattgacaactccgagctgctgcacatgctggagtctccagagtcgctccggtca
aaggtggaggaggccgtggccgtgttgcaggctcaccaagccaagaaagaagctgcccag
aaggtgggtgtggttgctgctacctcttga
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