KEGG   Eutrema salsugineum (saltwater cress): EUTSA_v10006688mg
Entry
EUTSA_v10006688mg CDS       T02985                                 
Name
(RefSeq) hypothetical protein
  KO
K12852  116 kDa U5 small nuclear ribonucleoprotein component
Organism
eus  Eutrema salsugineum (saltwater cress)
Pathway
eus03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:eus00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    EUTSA_v10006688mg
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:eus03041]
    EUTSA_v10006688mg
Spliceosome [BR:eus03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    EUTSA_v10006688mg
 Complex C
   U5 SnRNP specific factors
    EUTSA_v10006688mg
SSDB
Motif
Pfam: GTP_EFTU EFTUD2 EFG_C EFG_IV GTP_EFTU_D2 EFG_III MMR_HSR1 Septin Roc Ras SRPRB
Other DBs
NCBI-GeneID: 18994249
NCBI-ProteinID: XP_006417944
UniProt: V4L1Z7
LinkDB
Position
Unknown
AA seq 987 aa
MDDSLYDEFGNYIGPEIESDRESDDEIQDEELQDNQPEEDGSDGEHGHGGSNGWITTIND
VEMENQIVLPEDKKYYPTAEEVYGEDVETLVMDEDEQPLEQPIIKPVRDVRFEVGVKDSS
TYVSTQFLIGLMSNPTLVRNVALVGHLQHGKTVFMDMLVEQTHHMSTFNVKNEKHMKYTD
TRVDEQERNISIKAVPMSLVLEDSRSKSYLCNVIDTPGHVNFSDEMTASLRLADGAVLIV
DAAEGVMVNTERAIRHAIQDHLPIVVVINKVDRLITELKLPPRDAYYKLRHTIEVINNHI
SAASTTAGNLPLIDPAAGNVCFASGTAGWSFTLQSFAKLYSKLHGVDMDVDKFASRLWGD
VYYHPDTRVFKRNPPVGGGERAFVQFILEPLYKIYSQVIGEHKKSVETTLAELGVTMSNS
AYKLNVRPLLRLACSSVFGSSSGFTDMLVKHIPSPKEAAARKVDHAYTGPKDSTIYESMV
ECDPSGPLMVNVTKLYPKSDTSVFDVFGRVYSGRLQTGQSVRVLGEGYSPEDEEDMTIKE
VTKLWIYQARYRIPVSSAPPGSWVLIEGVDASIMKTATLCNANYDEDVYIFRALQFNTLP
VVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLRE
LYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLDRGLAEDIENGVVS
IDWNRKQLGDFFKTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEVDKSLMMAVKDSI
VQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQMIPTARRVAYSAFLMATPR
LMEPVYYVEIQTPIDCVTAIYTVLSRRRGHVTSDVPQPGTPAYIVKAFLPVIESFGFETD
LRYHTQGQAFCVSVFDHWAIVPGDPLDKAILLRPLEPAPIQHLAREFMVKTRRRKGMSED
VSGNKFFDEAMMVELAQQTGDLHLQMM
NT seq 2964 nt   +upstreamnt  +downstreamnt
atggatgatagcttgtatgatgagtttggtaactatattggacctgagattgagtctgac
agagagagtgatgatgaaatacaagacgaggagctccaagataatcagcctgaagaggat
ggatcggatggcgaacatgggcatgggggttcaaacggctggattaccacgatcaacgat
gttgagatggagaaccaaattgttcttcctgaggataagaagtactatcctactgcagag
gaagtttatggtgaggatgttgagaccttggttatggatgaagatgaacagcctcttgag
cagcccataatcaaacccgttagagatgttagatttgaggtgggggtgaaggattcttca
acatacgtgtcaacacagtttcttattggcctcatgtctaatcccaccctggtgaggaat
gttgctcttgtggggcatctacagcatgggaaaactgtcttcatggatatgttggtagag
cagacgcaccatatgtctacttttaacgttaaaaacgagaagcacatgaaatatacagac
acaagagttgatgagcaggagagaaacatttcaatcaaggcggttccgatgtcgcttgtc
cttgaggacagcaggtccaaatcatatctgtgcaatgtcatagataccccaggacatgtg
aacttctctgacgaaatgactgcttctctaagacttgctgatggtgctgttctgattgtt
gacgctgctgaaggagtgatggtaaacacagagagggctatacggcatgcaatccaggac
catctccccattgttgttgtgatcaataaggttgacaggctcataacagagctcaaacta
cctccaagggatgcttactacaagctgaggcatacaattgaagtcattaataaccacata
tctgctgcttcaacaactgctggaaacttacccctaatagaccctgcagcgggaaatgtt
tgctttgccagtggtactgccggatggtccttcacactgcaatcttttgctaagctctat
tccaagctacatggggtggacatggacgtcgataaatttgcatctcgactttggggagat
gtgtattatcaccctgatactagggtattcaagagaaatcctccagtagggggtggagaa
agagcatttgttcagtttatcctggagcctctatacaagatatacagtcaagtgataggt
gaacataagaagagtgtagagaccacccttgcagaattaggagtgactatgagtaatagt
gcatataagctgaacgtcagacccttacttaggttagcctgtagctcagtttttggttcg
tcatcagggtttactgatatgttggtaaagcacattccttctcccaaagaggctgcagct
aggaaagtggaccacgcatacactggacccaaggattctaccatttatgaatcaatggta
gaatgtgatccgtctggacccctcatggtcaatgtgacaaagctgtaccccaaatcagat
actagtgtgtttgatgtgttcggaagagtttacagcggtaggctacaaacagggcaaagc
gtacgtgttctaggagaagggtattcacctgaggatgaggaggacatgactataaaagaa
gtgacgaaactatggatatatcaagctaggtatagaatacctgtaagcagtgcccctcct
ggttcgtgggttctaattgaaggtgttgatgcgtccatcatgaaaactgcaacactgtgc
aatgcaaactatgacgaagatgtctacatattccgagcgctccagttcaacacgctcccg
gttgtcaagacagctacggagccgttaaaccctagtgagttaccaaaaatggtagagggg
cttaggaaaattagtaaaagttatccccttgctattaccaaagttgaggagtctggagaa
catactattctaggcacaggtgagttgtacttggattctatcatgaaggaccttagggag
ctctattcagaggtcgaagtaaaggtggcagatccggtggtctccttctgtgagacagtg
gttgaatcttcgtcaatgaagtgttttgctgagacaccgaacaaaaagaacaaaataact
atgatcgcagagccattggatagaggacttgcggaggacattgagaatggtgtcgtaagc
attgactggaacagaaaacaactcggtgacttcttcaagacgaaatatgactgggattta
cttgcggcgcgttccatttgggcttttggccctgacaaacaggggccaaatattttactg
gatgacaccctcccaactgaggttgacaagagcttgatgatggcagtgaaagactccatt
gttcaagggttccagtggggtgcgcgagaaggacccctgtgtgatgagcccatcagaaat
gtaaagttcaagattgttgatgcccggatagcaccagagccgttgcatcgaggatctggt
cagatgattccaacggcgcgacgtgtcgcatattcagcctttcttatggcaactccaagg
ctaatggaacctgtctactatgtagagatacaaacaccaatcgactgtgtaactgccatc
tacacagttctgtcacgtagacgtgggcatgtcacatcggatgttcctcagcctggaacc
ccagcttatatcgtgaaggcttttctaccagtgatagaatcatttgggtttgagacagat
ctgagataccacacacagggacaagccttttgcgtatctgtgtttgatcactgggccata
gtgccaggagaccctctcgacaaagccatcctattgcgcccacttgagcccgcccctatt
cagcatctagctcgtgaatttatggtcaagacccgccgtagaaagggaatgagtgaggat
gtaagcgggaacaagttcttcgatgaagcgatgatggtggagcttgcgcagcagacgggt
gatctgcatttgcaaatgatgtga

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