Eutrema salsugineum (saltwater cress): EUTSA_v10006688mg
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Entry
EUTSA_v10006688mg CDS
T02985
Name
(RefSeq) hypothetical protein
KO
K12852
116 kDa U5 small nuclear ribonucleoprotein component
Organism
eus
Eutrema salsugineum (saltwater cress)
Pathway
eus03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
eus00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
EUTSA_v10006688mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
eus03041
]
EUTSA_v10006688mg
Spliceosome [BR:
eus03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
EUTSA_v10006688mg
Complex C
U5 SnRNP specific factors
EUTSA_v10006688mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GTP_EFTU
EFTUD2
EFG_C
EFG_IV
GTP_EFTU_D2
EFG_III
MMR_HSR1
Septin
Roc
Ras
SRPRB
Motif
Other DBs
NCBI-GeneID:
18994249
NCBI-ProteinID:
XP_006417944
UniProt:
V4L1Z7
LinkDB
All DBs
Position
Unknown
AA seq
987 aa
AA seq
DB search
MDDSLYDEFGNYIGPEIESDRESDDEIQDEELQDNQPEEDGSDGEHGHGGSNGWITTIND
VEMENQIVLPEDKKYYPTAEEVYGEDVETLVMDEDEQPLEQPIIKPVRDVRFEVGVKDSS
TYVSTQFLIGLMSNPTLVRNVALVGHLQHGKTVFMDMLVEQTHHMSTFNVKNEKHMKYTD
TRVDEQERNISIKAVPMSLVLEDSRSKSYLCNVIDTPGHVNFSDEMTASLRLADGAVLIV
DAAEGVMVNTERAIRHAIQDHLPIVVVINKVDRLITELKLPPRDAYYKLRHTIEVINNHI
SAASTTAGNLPLIDPAAGNVCFASGTAGWSFTLQSFAKLYSKLHGVDMDVDKFASRLWGD
VYYHPDTRVFKRNPPVGGGERAFVQFILEPLYKIYSQVIGEHKKSVETTLAELGVTMSNS
AYKLNVRPLLRLACSSVFGSSSGFTDMLVKHIPSPKEAAARKVDHAYTGPKDSTIYESMV
ECDPSGPLMVNVTKLYPKSDTSVFDVFGRVYSGRLQTGQSVRVLGEGYSPEDEEDMTIKE
VTKLWIYQARYRIPVSSAPPGSWVLIEGVDASIMKTATLCNANYDEDVYIFRALQFNTLP
VVKTATEPLNPSELPKMVEGLRKISKSYPLAITKVEESGEHTILGTGELYLDSIMKDLRE
LYSEVEVKVADPVVSFCETVVESSSMKCFAETPNKKNKITMIAEPLDRGLAEDIENGVVS
IDWNRKQLGDFFKTKYDWDLLAARSIWAFGPDKQGPNILLDDTLPTEVDKSLMMAVKDSI
VQGFQWGAREGPLCDEPIRNVKFKIVDARIAPEPLHRGSGQMIPTARRVAYSAFLMATPR
LMEPVYYVEIQTPIDCVTAIYTVLSRRRGHVTSDVPQPGTPAYIVKAFLPVIESFGFETD
LRYHTQGQAFCVSVFDHWAIVPGDPLDKAILLRPLEPAPIQHLAREFMVKTRRRKGMSED
VSGNKFFDEAMMVELAQQTGDLHLQMM
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
atggatgatagcttgtatgatgagtttggtaactatattggacctgagattgagtctgac
agagagagtgatgatgaaatacaagacgaggagctccaagataatcagcctgaagaggat
ggatcggatggcgaacatgggcatgggggttcaaacggctggattaccacgatcaacgat
gttgagatggagaaccaaattgttcttcctgaggataagaagtactatcctactgcagag
gaagtttatggtgaggatgttgagaccttggttatggatgaagatgaacagcctcttgag
cagcccataatcaaacccgttagagatgttagatttgaggtgggggtgaaggattcttca
acatacgtgtcaacacagtttcttattggcctcatgtctaatcccaccctggtgaggaat
gttgctcttgtggggcatctacagcatgggaaaactgtcttcatggatatgttggtagag
cagacgcaccatatgtctacttttaacgttaaaaacgagaagcacatgaaatatacagac
acaagagttgatgagcaggagagaaacatttcaatcaaggcggttccgatgtcgcttgtc
cttgaggacagcaggtccaaatcatatctgtgcaatgtcatagataccccaggacatgtg
aacttctctgacgaaatgactgcttctctaagacttgctgatggtgctgttctgattgtt
gacgctgctgaaggagtgatggtaaacacagagagggctatacggcatgcaatccaggac
catctccccattgttgttgtgatcaataaggttgacaggctcataacagagctcaaacta
cctccaagggatgcttactacaagctgaggcatacaattgaagtcattaataaccacata
tctgctgcttcaacaactgctggaaacttacccctaatagaccctgcagcgggaaatgtt
tgctttgccagtggtactgccggatggtccttcacactgcaatcttttgctaagctctat
tccaagctacatggggtggacatggacgtcgataaatttgcatctcgactttggggagat
gtgtattatcaccctgatactagggtattcaagagaaatcctccagtagggggtggagaa
agagcatttgttcagtttatcctggagcctctatacaagatatacagtcaagtgataggt
gaacataagaagagtgtagagaccacccttgcagaattaggagtgactatgagtaatagt
gcatataagctgaacgtcagacccttacttaggttagcctgtagctcagtttttggttcg
tcatcagggtttactgatatgttggtaaagcacattccttctcccaaagaggctgcagct
aggaaagtggaccacgcatacactggacccaaggattctaccatttatgaatcaatggta
gaatgtgatccgtctggacccctcatggtcaatgtgacaaagctgtaccccaaatcagat
actagtgtgtttgatgtgttcggaagagtttacagcggtaggctacaaacagggcaaagc
gtacgtgttctaggagaagggtattcacctgaggatgaggaggacatgactataaaagaa
gtgacgaaactatggatatatcaagctaggtatagaatacctgtaagcagtgcccctcct
ggttcgtgggttctaattgaaggtgttgatgcgtccatcatgaaaactgcaacactgtgc
aatgcaaactatgacgaagatgtctacatattccgagcgctccagttcaacacgctcccg
gttgtcaagacagctacggagccgttaaaccctagtgagttaccaaaaatggtagagggg
cttaggaaaattagtaaaagttatccccttgctattaccaaagttgaggagtctggagaa
catactattctaggcacaggtgagttgtacttggattctatcatgaaggaccttagggag
ctctattcagaggtcgaagtaaaggtggcagatccggtggtctccttctgtgagacagtg
gttgaatcttcgtcaatgaagtgttttgctgagacaccgaacaaaaagaacaaaataact
atgatcgcagagccattggatagaggacttgcggaggacattgagaatggtgtcgtaagc
attgactggaacagaaaacaactcggtgacttcttcaagacgaaatatgactgggattta
cttgcggcgcgttccatttgggcttttggccctgacaaacaggggccaaatattttactg
gatgacaccctcccaactgaggttgacaagagcttgatgatggcagtgaaagactccatt
gttcaagggttccagtggggtgcgcgagaaggacccctgtgtgatgagcccatcagaaat
gtaaagttcaagattgttgatgcccggatagcaccagagccgttgcatcgaggatctggt
cagatgattccaacggcgcgacgtgtcgcatattcagcctttcttatggcaactccaagg
ctaatggaacctgtctactatgtagagatacaaacaccaatcgactgtgtaactgccatc
tacacagttctgtcacgtagacgtgggcatgtcacatcggatgttcctcagcctggaacc
ccagcttatatcgtgaaggcttttctaccagtgatagaatcatttgggtttgagacagat
ctgagataccacacacagggacaagccttttgcgtatctgtgtttgatcactgggccata
gtgccaggagaccctctcgacaaagccatcctattgcgcccacttgagcccgcccctatt
cagcatctagctcgtgaatttatggtcaagacccgccgtagaaagggaatgagtgaggat
gtaagcgggaacaagttcttcgatgaagcgatgatggtggagcttgcgcagcagacgggt
gatctgcatttgcaaatgatgtga
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