Eggerthella sp. YY7918: EGYY_19050
Help
Entry
EGYY_19050 CDS
T01566
Name
(GenBank) hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
eyy
Eggerthella sp. YY7918
Pathway
eyy03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
eyy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
EGYY_19050
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
eyy03400
]
EGYY_19050
Enzymes [BR:
eyy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
EGYY_19050
DNA repair and recombination proteins [BR:
eyy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
EGYY_19050
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
BAK45033
UniProt:
F7UV10
LinkDB
All DBs
Position
2072124..2074625
Genome browser
AA seq
833 aa
AA seq
DB search
MAAKLDEYNRKRDFTQTPEPAGSTGADPEAGTDIDGRLKFAVQHHLASHDHYDLRLEWDG
ALLSWAVPKGPSFNPHDKRLAVHVEDHPLAYRTFEGTIPKGEYGGGTVMLWDEGYWEPLV
PVKEGLDKGDLKFILHGQRLKGAWVLVHIKPKPGERDDNWLLIKEKDSYIQPEAGIAKFN
ASVSTGRTMDEIARGEDERFAQNPFDKVNVELAKLVNAVPPGDEWLYEVKYDGYRIVAFV
EASQARLITRNHHDYTDHFPTLANSLAEWAAGRAMVLDGEVVVTDEAGRSDFQALQNFLR
HPAGKQPLYMVFDLLALDGDDLRTLPLGERKERLETLLNDAPEEVRYSVHVRGHGAESFH
AACSQRLEGVVGKRADAPYHGTRNGDWIKLKCDKRQEFVVGGWTRTAKKSDGVSSLLLGA
YENGTLVYVGRVGSGIGEDDARELLAKFVGLERSAAPFVNPPKARSGEKSFWLEPALVAE
VKFAEWTDDGQLRHPSYQGLRVDKDPRAVIREDPSDIEQPPPPTERKKDPMPATTASFIP
ATPAHATGDLVIDGVTITSSDKLLFKDPDVTKGDVVRYYAQVADAMLPYTSGRILSIVRC
PRGAGSACFFKKHPGPHEKGIHAIDVTGSDGEQDEYFYVDDAVGIVSEAQMDTLEFHLWG
SRVETLEQPDMMVFDLDPDKSLGLDLVRRGVRDLKSILDDLGLQTFLKTSGGKGYHVVIP
LQPEASWDAFHDFARRIAQVMAEKWPDRYTSNVRLAKRNGKIFIDWMRNGRGATSIAPYS
LRARSGARVSMPISWDELDDVAPDAVTMADALARLARGDNPWKGYFDVKQSLR
NT seq
2502 nt
NT seq
+upstream
nt +downstream
nt
atggcagcaaagctcgatgaatacaaccgcaaacgagatttcacgcagacccccgaaccc
gcaggctcgacgggagctgatcccgaggccggcaccgatatagacgggcggctcaaattt
gccgttcagcatcatcttgcaagtcacgaccattacgatctacgccttgagtgggacggg
gcgctgctcagctgggctgttccaaaaggaccgtccttcaatccgcacgacaaacgactt
gccgtacacgtggaggatcatcccctagcctaccgaaccttcgaagggaccattcccaag
ggtgaatatggcggcggcaccgttatgttgtgggatgaagggtactgggagccgctcgtg
cccgttaaggaagggctggacaagggtgatttgaagttcattttgcatggacaacggctc
aagggcgcatgggtgctcgtccacataaaaccaaagccgggtgagcgagatgataattgg
ctgctcatcaaggaaaaagatagctacatacagcctgaagcgggcatcgcgaagttcaac
gcctccgtttcgacaggccgcaccatggacgagatcgcacgcggagaagatgaacgcttt
gcccaaaatccgtttgataaggtaaatgtagagcttgccaagctggtaaatgcagtaccc
ccgggcgacgagtggctttacgaggtgaagtacgacggctatcgcatagtcgccttcgtt
gaagccagccaagcgcgcctcatcacgcgcaatcatcatgactacaccgaccacttcccc
actttggcgaactcacttgccgaatgggccgctggacgtgcaatggtgctcgatggcgag
gtggtggtgaccgacgaggcagggcgatcggattttcaagcgctgcagaacttcctacgc
caccccgcaggcaagcaacccctctacatggtgtttgatcttctggcgcttgatggcgat
gacctgagaacgcttccacttggcgagcgcaaagagcgtctggagactctgctcaacgat
gcgcccgaggaagtgcgctacagcgtgcacgtaagagggcatggtgctgaaagctttcat
gcggcatgttcgcagcgtttagaaggagtcgtgggcaaacgcgccgatgcaccctaccac
ggcacacgcaatggcgactggataaaactcaaatgcgacaagcgccaagagttcgttgtg
ggcggatggactcgcacagctaagaagtccgatggcgtaagttcacttctgttgggcgcc
tacgaaaacggcacgcttgtgtacgtgggacgcgtgggatcaggcattggcgaggacgac
gcccgcgaactgctggcaaaatttgtaggccttgagcgatcggcagcgccgtttgtgaac
cctccgaaggcgcgttcgggcgagaagagtttctggcttgaaccggcgctggtagctgag
gtgaagttcgccgaatggaccgacgatggacagttgcgtcaccccagctatcaaggcctt
cgtgtagacaaggacccgcgcgcagtcatacgcgaagaccccagcgacatcgaacaaccg
ccgcctcccactgagagaaagaaggaccctatgcctgctacaactgcatcctttatccct
gccactcctgcgcacgccacgggcgaccttgtcatcgatggagtgaccatcacaagctcc
gacaaacttctctttaaagaccccgatgtcacaaagggagatgtcgtgcgctactatgca
caggtggctgacgcgatgttgccgtatacgagcggacgtattttaagtattgtgcgctgt
ccgcgtggcgcgggatcggcatgcttcttcaagaagcatccgggaccgcatgagaagggt
atccacgccatagatgtaaccggaagcgatggcgaacaggacgaatacttctatgtggat
gacgcggtaggcatcgtatccgaggcgcagatggacacgctcgaattccacctatggggc
agccgggtagagacgcttgagcagcccgacatgatggtattcgacctcgatcccgacaag
agtctcgggcttgacctggtgcgtcgcggggtgcgcgatctcaaaagcatcctcgatgac
ctgggtcttcaaacgtttctcaagacgagcggcggcaaaggctatcacgtggtaataccg
cttcaaccagaagcgtcgtgggatgccttccacgacttcgcacgacgcatcgcccaggtc
atggccgagaagtggcccgaccgttacaccagcaacgtgcgattagccaaacgtaacggc
aagattttcatcgactggatgcgcaacggccgcggagccacaagtatcgccccctactcg
ctgcgcgctcgcagtggcgcacgcgtttcaatgccgataagctgggacgagttggacgat
gtcgcgcccgacgctgtgacgatggccgacgccctcgcgcgtctcgcccgcggtgacaac
ccgtggaagggatacttcgatgtgaagcagtcgttgcggtag
DBGET
integrated database retrieval system
