Ficedula albicollis (collared flycatcher): 101808635
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Entry
101808635 CDS
T02815
Symbol
LIG3
Name
(RefSeq) DNA ligase 3
KO
K10776
DNA ligase 3 [EC:
6.5.1.1
]
Organism
fab
Ficedula albicollis (collared flycatcher)
Pathway
fab03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
101808635 (LIG3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fab03400
]
101808635 (LIG3)
Enzymes [BR:
fab01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
101808635 (LIG3)
DNA repair and recombination proteins [BR:
fab03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Short Patch-BER factors
101808635 (LIG3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
LIG3_BRCT
zf-PARP
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-GeneID:
101808635
NCBI-ProteinID:
XP_005056585
UniProt:
U3K569
LinkDB
All DBs
Position
19:complement(5723018..5739934)
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AA seq
983 aa
AA seq
DB search
MPTGGRALSHAARALGRGTALSCPRPQLPVPRAPSCSAGLSPACWCQLLLQPVSVPSPKQ
RRAARAFPLSLLLGSWLRSACTAAEDMAEQRYCVDYAKRGTAGCKKCKEKIVKGMVRIGK
IVPNPFTESGGDMKEWYHVKCIFEKLDKARATTKKIEDITDLEGWEELQDEDKEIINKHI
SEANAKTGGTPKKKVIVQAKLTATGQLTTKDPPKKFSGFTAKPKNSEDAPANSAQQPSLS
AARCDPKHKDCLLREFRKLCTMVAENPSYNVKTQIIRDFLRKGSAGDGFHGDVYLTIKML
LPGVIKIVYNLNDKQIVKLFSRIFNYNQEEMIRDLEQGDVSETVRICFERSKTCPPAARS
VLTIQEVDEFLIQLSKLTKEDDQQSVLQQISRRCTGNDLKCIIRLIKHDLRIYAGAKHVL
DALDPNAYEAFKASRNLQDVVERVLQNQLESEKEPGLKKTLSVQASLMTPVQPMLAEACK
SIEYAMKKCPNGMYAEIKYDGERVQVHKNGDHFSYFSRSLKPVLPHKVAHFKDFIPQAFP
GGQSMILDSEVLLIDNKTGKPLPFGTLGVHKKAAFQDANVCLFVFDCIYFNNVSLMDRPL
CERRKFLHDNMVEIPNRILFSEMKHVTKASDLADMITRVIREGLEGLVLKDLKGNYEPGK
RHWLKVKKDYLNEGAMADTADLVVLGAFYGQGSKGGMMSIFLMGCYDPKSEKWCTVTKCS
GGHDDATLARLQTELDMVKISKDPSKIPRWLKINKIYYPDFIVPDPKKAPVWEITGAEFS
RAEAHTADGISIRFPRCTRIRHDKDWQSATNLQQLKELYQLSKEKADFSVTAGEEDESTA
GSSGENDGNSRSSTPHSSIKSPPSKSPAKAQKAEESKGVIGSPEKSEEKRGEKRKASELE
DNGKKLPLLDIFTGVKLYLAPSVKDFARIRRYFIAFDGDLVSELDTASATHVIGDIGDSP
GAVRVTPRWIWECIRKRRLVAPC
NT seq
2952 nt
NT seq
+upstream
nt +downstream
nt
atgcccacgggcggcagggcgctgtcacacgctgcccgcgctctcggcaggggcactgcg
ctgtcctgccctcgcccgcagctccccgtgcccagagcgccgtcctgctctgccggactc
agccccgcttgctggtgccagctgctgctccagcctgtctccgtgccatccccaaagcag
cgccgtgctgcccgcgcttttcctctctccctgcttttgggcagctggctgcgctcggcc
tgcacggctgcagaggacatggcagagcagcgctactgcgtggactatgccaagcgaggc
accgcgggctgcaagaagtgcaaggagaagatcgtgaaggggatggtgcgcattgggaag
atcgttcccaatcctttcaccgagtctggaggggacatgaaggagtggtaccatgtcaag
tgcatctttgagaagctggacaaggcccgggccaccaccaagaaaatcgaagacatcaca
gacttggaggggtgggaagagctgcaggatgaggacaaagaaataatcaacaagcacatc
tcagaagccaatgccaagactggaggtaccccgaagaaaaaggtgatagtgcaggcaaaa
ctcactgccacaggacagctgaccacaaaagatccaccaaagaaattctctggattcacg
gccaagccaaagaattcagaagatgcccctgcaaactcagcccagcagcccagcctgtct
gcagccaggtgtgaccccaagcacaaggactgcctgctgcgggagttccgcaagctctgt
accatggtggctgagaaccccagctacaatgtgaaaactcagatcatccgggacttcctc
aggaagggatctgcaggagatggttttcatggtgatgtatacctgaccattaagatgctg
ttaccaggtgtcattaaaatagtttacaacttgaatgataagcagattgtaaagctgttc
agcaggatttttaactacaaccaggaagaaatgatccgggacctggagcagggagatgtt
tctgagaccgtgcggatctgcttcgagcggagcaagacgtgtcctccagcagccaggagc
gtcctgaccatccaggaggtggatgaattcctcatccagctctccaagctcaccaaggag
gatgaccagcagagtgtcctgcagcagatcagtcgcaggtgtacgggcaacgacctgaag
tgcatcatcaggctaattaagcatgacttgagaatttatgctggagcaaagcacgtgctg
gatgctctggatcccaatgcctacgaggccttcaaggcctccaggaatctgcaggacgtg
gtggaacgggtgctgcagaaccagctggagtctgagaaggagccagggctgaagaagacc
ctgagtgtgcaggcctcactcatgaccccagtgcagcccatgctggctgaggcctgcaag
tccatcgagtacgccatgaagaagtgtcccaacgggatgtacgccgagatcaagtacgac
ggcgagcgcgtgcaggtgcacaagaacggggatcacttcagctacttcagcaggagcctc
aaacctgtgctcccccacaaagtagcccattttaaggatttcatcccccaggctttccct
ggtgggcagagtatgatcctggattcagaagttctcctgattgacaataaaactggcaag
ccacttccttttgggactcttggtgtgcacaagaaagctgctttccaggatgccaacgtt
tgcctgtttgtgtttgactgcatctacttcaacaatgtcagcctgatggacaggcccctg
tgtgaacggcgcaagttcctccacgacaacatggtggagatccccaacaggatcctgttc
tcagagatgaaacatgtcacaaaagcttcagatctggcagacatgatcacccgagtcatc
cgggaggggctggaagggctggtgctgaaagatttaaagggaaattacgaaccagggaag
cgccactggctgaaggtgaagaaggattatctcaacgagggggcaatggctgacacagct
gacctggtggtgctgggggctttctatggacagggcagtaaaggtgggatgatgtccatc
ttcctcatgggctgctatgaccccaagagtgagaagtggtgcacggtgaccaagtgctct
ggtggccacgacgacgccaccctggcacgtctgcagacagagctggacatggtgaagatc
agcaaggatcctagtaaaattccaaggtggctaaaaattaacaaaatctactacccagac
ttcattgtcccagatccaaagaaagccccagtgtgggagatcaccggggccgagttctcg
cgggccgaggcgcacactgccgacggcatctccatccgcttcccgcgctgcacccgcatc
cgccacgacaaggactggcagagtgccaccaacctgcagcagctcaaggagctgtaccag
ctctccaaggagaaggctgatttcagtgttacagctggggaggaagatgagtccacagct
ggcagcagtggagagaatgatgggaattccaggtcttccacacctcacagcagtattaag
agtcccccaagcaagtcacctgcaaaagcccagaaggcagaagagagcaaaggagtcatt
ggctcccctgagaaatccgaggagaaacgaggggagaagagaaaagcatccgagctggag
gacaatggaaagaagctgccgctgctggacattttcacgggggtgaagctgtacctggcg
ccctccgtgaaggactttgcccgaatccgccgctacttcatcgccttcgacggggacctg
gtgtcagagttggacacggcctcggccacgcacgtcatcggggacatcggggacagcccc
ggcgccgtgcgcgtcacgccccgctggatctgggagtgcatccgcaagcgccggctggtg
gcgccgtgctag
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