Ficedula albicollis (collared flycatcher): 101814817
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Entry
101814817 CDS
T02815
Symbol
MBD4
Name
(RefSeq) methyl-CpG binding domain 4, DNA glycosylase
KO
K10801
methyl-CpG-binding domain protein 4 [EC:3.2.2.-]
Organism
fab
Ficedula albicollis (collared flycatcher)
Pathway
fab03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
101814817 (MBD4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
fab03036
]
101814817 (MBD4)
03400 DNA repair and recombination proteins [BR:
fab03400
]
101814817 (MBD4)
Chromosome and associated proteins [BR:
fab03036
]
Eukaryotic type
Heterochromatin formation proteins
MBPs (metylated DNA binding proteins)
101814817 (MBD4)
DNA repair and recombination proteins [BR:
fab03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
101814817 (MBD4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MBD
HhH-GPD
Motif
Other DBs
NCBI-GeneID:
101814817
NCBI-ProteinID:
XP_005053442
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Position
12:complement(21497577..21500401)
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AA seq
468 aa
AA seq
DB search
PPPQRVSSRRRAGRTAGRIDVYFVSPEGKKLRSKRALVEYLQKTGETTLKAADFDFTAPR
GSTRSGLRGYGTGAVRTDLEKEDCQSKVQDLHVQNGAEVGIQNMQAENGHLEDATSTMES
TDLVMQDTEPEESLKTRRKGADGKSVRTRRRGKGSERRNQGDPKSKRQRRISNTLETECV
QKKGVHRQTGTRGAASQAVGDAGKALSRVSRARLRSLAGSQRELGHLPEEGPCCSDTPAV
GPEEKSCGLETGKVLDPGDLGQQKGKSDTQVDAEPWARTGCSAVTMSPEESVPQTQVDRR
KTSPYFSSKYNKEAPNPPRRKALRKWTPPRSPFNLIQETLFHDPWKLLIATIFLNKTAGK
MAIPVLWEFLKKYPSPEVARAADWKEMSELLKPLGLYELRAKTIIRFSGEYLSKAWRYPI
ELHGIGKYGNDSYRIFCVNEWKEVQPQDHKLNVYHTWLWENHERLSID
NT seq
1407 nt
NT seq
+upstream
nt +downstream
nt
ccccccccccagcgggtcagcagccgcaggcgggcgggcaggacggccggcaggatcgac
gtgtacttcgtgagccctgaagggaagaagctgagatcaaaacgagctcttgtggagtat
ttgcagaaaactggagagacaacactgaaagcagcagattttgattttacagctcctcga
gggagcacacgctcagggttgaggggatatggcacaggggctgtgaggactgatctggaa
aaggaggactgtcagagcaaagtgcaggatctccatgtacagaatggtgctgaggttgga
attcagaacatgcaggctgagaatggacacctggaagatgctacatctactatggaaagc
acagatttagtaatgcaagacacagagccagaggagagtttgaaaaccagaagaaagggg
gcagatgggaaaagtgtccgaactaggagacgtgggaagggctcagaaaggaggaaccaa
ggtgaccccaagagcaagaggcagagaagaatctctaacaccctggagaccgagtgtgtt
cagaagaagggagtgcacagacagacaggcacccgtggagctgccagccaggctgtgggt
gatgcagggaaagctctgtcaagagtgtccagggcacggctgaggtccctggctggctca
cagagggagctgggccacctgccagaggaggggccatgctgcagtgacacacctgctgtg
gggcctgaggagaaatcctgtggactggagacagggaaggtgctggatccaggggatctg
ggtcagcagaaaggtaaatctgacacccaggtggatgctgagccctgggccaggacaggc
tgctcagcagtcacaatgtcaccagaagagtctgtcccacaaacacaagtggatagaagg
aaaacgagtccatatttttccagtaaatacaacaaagaagcccccaacccacccagaagg
aaggccctcagaaaatggactcctccacgttctcctttcaatcttatccaagaaacactc
ttccatgatccatggaagcttctcattgccaccatatttctcaacaaaactgcagggaaa
atggccattccagtgctctgggagttcctgaagaagtatccttctcctgaggtagccagg
gctgcagactggaaagagatgtcagagctgctcaaacctctgggcctctatgaactcaga
gccaaaaccatcatcaggttctcaggtgagtacctgagcaaggcgtggcgttaccccatc
gagctgcacggcatcggcaagtacggcaacgactcctacagaatcttctgtgtcaacgag
tggaaggaggtgcagccacaggaccacaagttgaacgtgtaccacacgtggctgtgggag
aaccacgagaggttgagcattgactga
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