Ficedula albicollis (collared flycatcher): 101816194
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Entry
101816194 CDS
T02815
Symbol
PRPF40A
Name
(RefSeq) pre-mRNA processing factor 40 homolog A
KO
K12821
pre-mRNA-processing factor 40
Organism
fab
Ficedula albicollis (collared flycatcher)
Pathway
fab03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101816194 (PRPF40A)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
fab03041
]
101816194 (PRPF40A)
Spliceosome [BR:
fab03041
]
Complex A
U1 snRNP components
U1 related factors
101816194 (PRPF40A)
Complex B
101816194 (PRPF40A)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
Motif
Other DBs
NCBI-GeneID:
101816194
NCBI-ProteinID:
XP_005049800
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Position
7:complement(38013052..38040192)
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AA seq
784 aa
AA seq
DB search
MGHPGMPHYPPMGMHPMGQRPPNMPPVPHGMMPQMMPPMGGPPMGQPGVNSMDAQVGVTP
PGTQTTHPVVSTVQQSSTSTSSATEDHSKQKSTWTEHKSPDGRTYYYNTETKQSTWEKPD
DLKTPAESSTATAAATGGTAEGDPAPAAATTGDTESAGTATAEEQGQPSAATGAQDSGTD
SAAAAGEETGKQEGTADAAAKKEDEDAQPVKKTYTWNTKEEAKQAFKELLKEKRVPSNAS
WEQAMKMIINDPRYSALAKLSEKKQAFNAYKVQTEKEEKEEARSKYKEAKESFQRFLENH
EKMTSTTRYKKAEQMFGEMEVWNAISERDRLEIYEDVLFFLSKKEKEQAKQLRKRNWEAL
KNILDNMANVTYCTTWSEAQQYLMDNPTFAEDEELQNMDKEDALICFEEHIRALEKEEEE
EKQKSLLRERRRQRKNRESFQLFLDELHEHGQLHSMSSWMELYPAISSDIRFTSMLGQPG
STALDLFKFYVEDLKARYHDEKKIIKDILKDKGFVVEVNTSFEDFVTVISSTKRATTLDA
GNIKLAFNSLLEKAEAREREREKEEARKMKRKESAFKSMLKQATPPIELDAVWEDIRDRF
VKEPAFEDITLESERKRIFKDFLHVLEHECQHHHSKTKKHSKKSKKHHRKRSRSRSGSES
EDDDSHSKKKRQRSESRSASERSSSAESERSYKKSKKHKKKSKKRRHKSDSPESDVEREK
DKKERERDSEKERARQRSESKHKSPTKKRPGKDSGNWDTSGSELSEGELEKQRRTLLEQL
DEDQ
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atgggacacccaggaatgccccactacccccccatgggcatgcaccccatggggcagaga
ccccccaacatgcccccagtgccccacgggatgatgcctcagatgatgccccccatggga
gggccccccatggggcagccaggagtgaacagcatggatgcacaagtaggtgtgacccct
cctggaactcagacaacccatcccgtggtctccacagtccagcaaagctccaccagcacc
agctctgccactgaggaccactccaagcagaaatccacgtggacagagcacaaatcccca
gatggaagaacttattactacaacactgagaccaagcagtccacctgggagaagccagat
gacctcaaaacccctgctgagagcagcacagccactgctgctgccacggggggaactgct
gagggggaccctgctcctgctgctgccaccacaggggacaccgagagcgctggcactgcc
accgctgaggagcagggccagcccagcgccgccaccggcgcccaggacagcggcaccgac
agcgccgccgccgccggggaggagacgggcaagcaggaggggacagcagatgctgctgca
aagaaggaggatgaggatgcccaaccagtgaaaaaaacctacacgtggaacacaaaggaa
gaggccaaacaagcatttaaagagctgttaaaagaaaagcgggttccatccaatgcttcc
tgggagcaggccatgaaaatgatcattaatgaccccagatacagtgctttggcaaaactg
agtgaaaaaaaacaagccttcaatgcttacaaagttcagacagagaaggaggagaaggaa
gaagccagatccaagtacaaggaagccaaggaatccttccaacgtttcctagaaaaccat
gagaagatgacatccaccaccagatacaaaaaagctgagcagatgtttggggagatggag
gtgtggaatgccatctctgagagggaccgcctggagatttatgaggatgttctgttcttc
ctgtccaagaaggaaaaggaacaagccaaacagctgaggaagaggaactgggaagctctg
aagaacattttggacaacatggccaatgtcacctactgcaccacgtggtcagaggcacag
cagtacctgatggacaaccccacctttgctgaggatgaggagctccagaacatggataag
gaggatgccctgatctgttttgaggaacatatcagggctttggagaaagaggaggaggaa
gagaagcagaagagtttgctgagggagaggaggaggcagcggaaaaacagggaatctttc
cagctgtttctggatgagctgcacgagcacgggcagttgcactccatgtcctcctggatg
gaattgtacccagccatcagctctgacatcagattcaccagcatgctgggccagcctgga
tcaacagcacttgacctcttcaagttctacgtggaggatttaaaagctcgttaccacgac
gagaagaaaatcattaaagacatcctaaaggataaagggttcgtggtggaggtgaacact
tcctttgaggattttgtcactgtcatcagctccaccaaaagagccaccaccttggatgct
gggaatatcaagctggctttcaacagtctgctggagaaggcggaggcgcgggagcgcgag
cgcgagaaggaggaagcgcggaagatgaagaggaaggagtcggccttcaagagcatgctg
aaacaggccacacctcccatcgagctggatgcagtctgggaggatatcagagacagattt
gtgaaggaaccagcatttgaagacatcaccctggaatctgaaaggaaaagaatatttaag
gatttccttcatgtacttgagcacgagtgtcagcaccaccactccaaaaccaagaaacat
tcgaagaaatccaagaagcatcaccggaagcgctcccgttcccgctcgggctcggagtcc
gaggacgacgacagccactccaagaagaagcggcagcgctcggagtcgcgctcggcgtcg
gagcgatcgtccagcgccgagtccgagaggagttacaagaagtccaaaaaacacaagaag
aagagcaagaagaggaggcacaagtctgattcaccagaatctgatgtggaacgagagaag
gacaagaaagaaagggagagggacagtgagaaggaaagagccagacagagatctgagtcc
aagcacaaatcccccacgaagaaacggcctgggaaggattctgggaactgggacacctct
ggcagtgagctcagcgagggggagctggagaagcagaggagaactcttctggagcagctg
gatgaagatcagtga
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