Ficedula albicollis (collared flycatcher): 101819454
Help
Entry
101819454 CDS
T02815
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
fab
Ficedula albicollis (collared flycatcher)
Pathway
fab03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
101819454 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fab03400
]
101819454 (LIG4)
Enzymes [BR:
fab01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
101819454 (LIG4)
DNA repair and recombination proteins [BR:
fab03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
101819454 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
RNA_ligase
mRNA_cap_enzyme
Tox-REase-9
HTH_Tnp_Tc3_2_like
Motif
Other DBs
NCBI-GeneID:
101819454
NCBI-ProteinID:
XP_005037722
LinkDB
All DBs
Position
1:37354061..37357400
Genome browser
AA seq
912 aa
AA seq
DB search
MASAPASQPPPKKTVASQVPFAHLCFTLERMQKCKSRPEKTKHFKDFLDSWRRFHDALHQ
KEKDVTDSFYPAMRLILPQLERERMAYGIKETMLAKLYIELLNLPKDGKDAARLLNYRTP
TGSRGDAGDFAMIAYFVLKPRSPKQGRLTIEQVNEHLDVIANNNVAKNKGQLKKSLLQLI
SQSTALEQKWLIRMIIKDLKLGVSQQTIFNIFHPDAAELHNVTTDLEKVCRELHDPSVSL
SDVSIMLFSAFKPMLAAIADVQQIEKQMGNQTFYIETKLDGERMQMHKDGDVYKYFSRNG
FDYTQQFGASPLEGSLTPFIHNVFKSNIQNCILDGEMMAYNPETQTFMQKGNKFDIKRMV
EDSDLQTCFCVFDVLMVNDQKLGHEVLSKRYEILSSVFTPVKGRIHIVHKRSARTRKEVI
DALNDAIDNREEGIMVKDPTSTYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYWGKGA
RGGMMSHFLCAVAETPPPNEKPTIFHSICRVGSGYTMKELYDLGLKLSKHWKPYNRKDPP
GNILCGTEKPEMYIEPCNSVIVQIKAAEIVDSDMYKTDCTLRFPRIEKIREDKEWYECMT
SDMLEDLRSKAQGKLASKHLHIDENDEPHEKKRKTVSKVRKVIGIAEQFKAPDLSSVSKV
SNVFEDVEFCVMTGTGKYSKSELESRIAQCGGSVVQNPGPETYCVIVGAENVRVKNIIAS
NKYDVVRAEWLLQCFQSKMLVPWQPAFMIHMSPDTKEHFAREYDCYGDSYTANTDVAQLR
EVFSRMKDNKAMPLDLIAELEERYWENSCQLGIFRGSAIYVDCYAVVNVPKSKIPGNALS
IRALELRFYGAKVVSHLEEGVSHVVVGEDRSRVEEMKALRRTFGKKFKIVSELWVTDSVQ
EGVAKNENQYLV
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atggcttctgcacctgcttcgcagcctcctcctaaaaaaacagtggcctctcaagtgcct
tttgcacatctgtgttttactctggagcgaatgcagaagtgcaaatctcgtccagagaaa
accaagcatttcaaggattttctggattcctggaggagattccatgatgcgcttcatcaa
aaagagaaagatgtcacagattccttttacccagctatgcgacttatactgccacagttg
gaaagagaaaggatggcatatggaattaaagaaaccatgcttgcaaagctctatattgaa
ctgcttaatttaccaaaagatggaaaagatgctgcaaggcttttaaattacagaacacct
acgggctcacgtggagatgctggagattttgcaatgattgcatactttgtgctaaaacct
aggagcccaaaacaaggcagactgacaatagagcaagtcaatgaacatttagatgtgata
gctaataataatgttgctaaaaacaagggtcagttaaagaaaagtcttcttcagttaatt
agtcagagcacagcgctggaacagaaatggcttatccgaatgattataaaggatctaaag
cttggtgttagtcaacaaactatatttaacatttttcatcctgatgctgctgaattgcac
aatgttactactgatttggaaaaagtttgcagagaactgcatgatccctctgtctcactt
agtgatgtttctatcatgttgttttctgcctttaaaccaatgcttgctgctattgcagat
gtccagcaaattgagaaacaaatgggtaaccagacattctacatagaaactaagctggat
ggtgaacgtatgcagatgcacaaagatggggatgtgtacaagtatttttcccgaaatggg
tttgactatactcagcagtttggtgcttccccccttgaaggttcattaacgccatttatt
cacaatgtatttaagagcaatatacaaaattgcattcttgatggtgaaatgatggcttac
aatcctgagacacaaacttttatgcaaaaaggtaacaaatttgacataaaaagaatggtg
gaggactctgatctgcagacctgcttctgtgtatttgatgtgttgatggttaatgatcag
aagttggggcatgaagtcctaagcaaaagatacgaaatcttaagtagtgtatttacccca
gtaaagggcaggatacatattgtccataagagaagtgccagaacaagaaaagaagtaatt
gatgctttaaatgacgcaatagataacagagaggaaggaattatggtgaaagatcccacg
tccacctacaagcctgacaaacgtggggaaggctggttaaaaatcaagccagaatatgtc
aatggactgatggatgaactggaccttttaattgttggtggttactgggggaagggggct
cgtggtggaatgatgtctcattttttatgcgctgttgcagagactccccctccaaatgaa
aaaccaaccattttccactccatttgtcgtgttggatccggctatactatgaaagagttg
tatgatctaggcttgaaattgtctaaacactggaagccctacaataggaaggaccctcct
ggtaacatcttgtgtggaactgaaaaaccagaaatgtacattgaaccttgcaactctgtc
atagttcagatcaaggcagctgagattgttgacagtgatatgtacaaaactgactgtact
ttgagattcccccgaattgagaagataagagaagacaaagaatggtatgagtgcatgact
tcagacatgttagaagacctcagaagcaaagcacaaggaaagctggcctctaagcacctt
catatagatgagaatgatgagccacatgagaaaaaaaggaaaactgtttcaaaggtgagg
aaggtaattggaatagctgagcagtttaaagctcctgatctttctagtgtaagcaaggtt
tcaaatgtatttgaagacgttgagttttgtgttatgacaggaacaggaaaatactcaaag
tctgagctggaaagcagaatagcccaatgtggtggcagtgtggtacagaacccggggccg
gagacttactgtgtcattgtaggagctgagaatgtcagagtgaaaaacattattgcttcc
aacaaatatgatgtggtgagggcagagtggctccttcagtgttttcaaagcaaaatgctg
gtgccttggcaaccagcctttatgattcacatgtctcctgacacaaaagaacattttgct
cgtgagtatgattgttatggagacagttacacagcaaacacagatgttgcacagctcagg
gaagtgttctcaagaatgaaagacaataaggcaatgcctctggacttgattgcagagctg
gaagaacgttattgggagaacagttgtcagcttggtatattcaggggaagcgccatttat
gtggactgttatgctgttgttaatgtgcccaaaagcaaaatccctggaaatgccctatca
attagggctttggagctccgtttttatggtgcaaaagtagtttctcaccttgaagagggt
gtctcccatgttgttgtaggagaagatcgttcacgggtagaagaaatgaaagcactcagg
agaacatttgggaaaaaatttaaaattgtgtccgagctgtgggtaacagactcagtgcag
gaaggagtcgcaaagaatgaaaatcagtacttagtttaa
DBGET
integrated database retrieval system
