Ficedula albicollis (collared flycatcher): 101819808
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Entry
101819808 CDS
T02815
Symbol
COLEC12
Name
(RefSeq) collectin subfamily member 12
KO
K10062
collectin sub-family member 12
Organism
fab
Ficedula albicollis (collared flycatcher)
Pathway
fab04145
Phagosome
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
101819808 (COLEC12)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
fab04131
]
101819808 (COLEC12)
09183 Protein families: signaling and cellular processes
04091 Lectins [BR:
fab04091
]
101819808 (COLEC12)
Membrane trafficking [BR:
fab04131
]
Endocytosis
Phagocytosis
Opsonins
101819808 (COLEC12)
Lectins [BR:
fab04091
]
C-Type lectins
Group 2: Type II membrane receptors (Asialoglycprotien and DC receptors)
Scavenger receptor with a CTLD (SRCL)
101819808 (COLEC12)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Lectin_C
Filament
Fib_alpha
Alpha-2-MRAP_C
KxDL
DUF3829
ParM_N
Crescentin
Motif
Other DBs
NCBI-GeneID:
101819808
NCBI-ProteinID:
XP_005041996
UniProt:
U3JUP5
LinkDB
All DBs
Position
2:107583397..107681669
Genome browser
AA seq
742 aa
AA seq
DB search
MKDDFAEEEEVQSFGYKRFGIQEGSQCTKCKNNWALKFSIILLYILCALLTITVAILGYK
VVEKMDNVTGGLETSHRRYTEKLTEVESDLKKLDDQAGQKALNTNTELSSFRSDILALRQ
QLHDIAEKTTRNKDTLEKLQESGNVLDDRQNQMKSALDSNSFMIISVNKTLQAYTGYINN
LQQDTSNIQTNLQSQEHSHNVIIMSLNNLNLTQIQQRNLISDLQKSMEDTSSAILRIRND
FQNLQQVILQARKDTDWLKEKVHNLQALAANNSAMAKANNDTLEDMNNQLTSFSGQMENI
TTIAQANEQSLKDLQEQHKGDENRTAAKFSHLEERFQAFETDIVNIISNISYTAHHLRTL
TSNLNEVRTTCTDTLSKHSDELIFMNSTLANIRIDSASLKVQQDLMRSRLDVEVANLSVI
MEEMKLVDSKHGQLIKNFTILQGPPGPRGPKGDRGPQGPLGPAGLKGQKGDRGEPGPPGP
AGEKGPPGPAGPPGEKGGKGSRGSPGSKGQRGSPGKTGLPGPNGDPGPPGPPGKDGPPGP
QGPPGFQGLQGTVGSPGLPGPRGMTGLPGVPGLPGPKGPPGPPGPPGPGMPMALQSEPTP
VPEANGCSPHWKNYTEKCYYFSIEREIFEEAKLFCEERASRLVIINNKEEQQWIKRQIFG
KGSFWIGLTDSEKENEWRWLDGSLPVYTNWKTGQPDNWSHGHGPGEDCAGLIYAGLWNDF
YCEDVNNFICEKDMDKGQILGV
NT seq
2229 nt
NT seq
+upstream
nt +downstream
nt
atgaaagacgactttgcagaggaggaggaggtgcagtccttcggctacaagaggtttggt
attcaggaggggagccaatgtaccaagtgtaaaaataactgggcactgaagttctccatc
atcttattatacattttatgtgccctgttaacaatcacagtagccattctgggatacaaa
gttgtagaaaaaatggacaatgtgacaggtggcctggaaacatcccacagaagatacaca
gaaaagctcacagaagtggagagtgatctgaagaaattagatgatcaagctggacaaaaa
gccttgaatactaacactgaactgtccagcttcagatctgacattctggctcttcgtcag
caacttcatgacattgcagagaaaactaccagaaacaaagatacactggagaagctgcaa
gagtctggaaatgtattagatgatagacagaaccaaatgaaaagtgccttagatagtaac
tctttcatgatcatcagtgtcaataagactcttcaggcatatactggctatatcaacaat
cttcaacaagacacaagtaatatacaaacaaaccttcaaagccaagagcattctcataat
gtgatcatcatgagcctgaataacttaaacctgactcaaatacagcaaagaaatcttatc
agtgacttacagaaatcaatggaagatacaagttcggctattctaagaatcaggaatgat
tttcaaaatctgcagcaggttatccttcaggcccggaaggacactgactggcttaaggag
aaagtacacaatttacaggctttggctgccaacaattcagcaatggcaaaagccaacaac
gatacacttgaagacatgaacaatcagctcacctccttcagtgggcagatggagaacatc
accacaattgcccaagccaacgaacaaagtctaaaggatctccaggaacagcataaagga
gatgaaaacagaactgctgccaaattcagccatctagaagaaaggttccaggcctttgaa
accgatatagtcaatatcatcagcaacatcagctacaccgctcatcacctacggacactg
acgagcaatctcaatgaggtcaggacaacttgtacggacaccttaagcaaacactcggac
gagctgatttttatgaacagcacgctagccaatatccgcatagactctgcatctcttaag
gtgcaacaggatttgatgagatcaaggttagatgttgaagttgccaatttgtcagtaatc
atggaagaaatgaagctggtggattccaaacacggccagctcatcaagaacttcactatt
ctacaaggccctcctggtcctaggggacctaaaggtgacagaggccctcaaggtcctctt
ggccccgctggtctaaaaggacaaaaaggagacagaggagagcccggaccaccaggacct
gcgggtgagaagggcccacccgggccagccgggccaccaggagaaaaaggagggaaaggt
tcaagaggatcgcctggctccaaaggtcagagaggttctcccggcaagacaggtctgcct
gggccaaatggagacccagggccaccagggccgccaggcaaggatggtccgccagggcct
caaggcccaccaggattccaaggcctgcagggaacagtgggaagcccggggttaccagga
ccacgagggatgactggactgcctggagtccctgggctgcctggtccaaagggcccaccc
ggcccaccggggccaccaggtccggggatgccaatggcactgcagagtgaacccacgccc
gtacccgaggccaatggttgttctccccactggaagaactacacggaaaagtgctactac
ttttcgattgaaagagaaatttttgaagaggcaaagttgttctgtgaagagagagcatca
cgcttggttatcatcaacaacaaagaggaacagcaatggataaaaaggcagatttttggg
aaaggcagcttctggattggactaacagattcagagaaggaaaacgaatggagatggttg
gatggatccttgccagtttacacaaactggaaaactgggcagcctgataactggagtcac
gggcacgggccaggggaagattgcgccgggttgatctatgctgggctctggaatgacttc
tactgtgaagatgttaacaatttcatttgtgaaaaagacatggacaaagggcaaattctt
ggagtgtaa
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