Frankia alni: FRAAL4382
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Entry
FRAAL4382 CDS
T00384
Name
(GenBank) hypothetical protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
fal
Frankia alni
Pathway
fal03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
fal00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FRAAL4382
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fal03400
]
FRAAL4382
Enzymes [BR:
fal01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FRAAL4382
DNA repair and recombination proteins [BR:
fal03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
FRAAL4382
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
CAJ63024
RhizoBase:
FRAAL4382
UniProt:
Q0RHK2
LinkDB
All DBs
Position
4763378..4765123
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AA seq
581 aa
AA seq
DB search
MGSDDAGGDHARGSRLAEYRSRRHSGRTPEPDVSPLADAGDDGGRRTPRSQERPTSPAPP
PPDHTGDDQNGRGDRFVIHEHHARRLHWDVRLERDGVLVSWAVPRGLPTDSRRNHLAVRT
EDHPLAYADFAGTIPKGEYGAGEVSVWDRGRYRLESWSAEKVKVTLLGERVQGRYAFFAT
GRAHGGGTGSDQRSDRGDRNWMVHRMDPRGDTDPGGTDPDGTGQPRRAGRPARTDPARSP
DLPGGTESRDSMDPPGDPERTPMPGRMAPMLAVPAAAPPEGDDWAYEVKWDGVRALAFVD
GGRPRLRSRSGHDVTDVFPELHTLGPAFGATQVILDGEIVAFGPAGTPDFELLSHRVHIA
TPAIARRAAATIPVRYLVFDLLFLDGHSLLAWPYSGRRALLADLADRGRLRISEELVGTG
DEVVAASAAAGLEGVVAKRRSSPYQPGRRSVDWVKVRHVRRQSVLVGGWEPGTGRRADRI
GALLVGVATPAGPRYAGQVGTGFSEATLDRLAALLAPLRRSDPPLRDVPAEVARGAVWVD
PELIAEVEFTSWTTDGRLRHPSFQGLRIDISPADTARMEET
NT seq
1746 nt
NT seq
+upstream
nt +downstream
nt
atgggcagtgacgacgccggtggcgaccacgcgcgagggtctcggctggccgagtaccgg
tctcgccggcacagcgggcgcacccccgaaccggacgtgtcacccctcgccgatgcgggc
gacgatggcggccggcgtaccccccgttcgcaggagcgcccgacctcccccgcacccccg
ccgcccgatcacacgggagacgaccagaacggccgcggcgaccggttcgtgatccacgag
caccacgcccgccggctgcactgggatgtccgcctggaacgggacggggtcctggtcagt
tgggcggtgccccgcggattgccgacggattcccgcaggaaccatctggccgtccgcacc
gaggatcatcccctcgcctacgccgacttcgccgggaccatcccgaagggggagtacggc
gccggtgaggtgagtgtctgggaccgtggccgctaccggctggagtcctggtcggcggag
aaggtcaaggtgacgctgctcggcgagcgggtccagggacgttacgcgttcttcgccacc
ggacgcgcccacggcggggggaccggatcggaccagaggtcggaccggggggaccgaaac
tggatggttcaccggatggacccgcggggcgacacggacccaggcggcacggatccagac
ggcacgggccagccacgccgcgcgggccggccggcccgcacagacccggcgcgcagcccg
gacctgccggggggtacggaatcgcgggacagcatggacccgccgggcgaccccgaacgc
acgccgatgccgggccggatggcaccgatgctcgccgttcccgccgccgcaccgccggag
ggggacgactgggcctacgaggtcaagtgggacggggtacgggcactcgccttcgtcgac
ggcggccggcccaggctgcgcagccgctcggggcacgacgtcaccgacgtcttccccgag
ctgcacacgctcggcccggcgttcggcgccacccaggtgatcctcgacggggagatcgtc
gccttcggcccggcgggtacgcccgacttcgagttgctcagccaccgggtacacatcgcg
acgccggccatcgcgcgtcgtgccgcggcgacgattcccgtccggtacctggtgttcgac
ctgctgttcctcgacgggcactcgctcctcgcatggccctactccgggcggcgggcgctg
ctggccgacctcgccgaccgcgggcggctgcgcatctccgaggaactggtcggtacgggc
gacgaggtcgtggcggcgagcgccgccgccggcctggagggggtcgtggccaaacggcgc
agttccccctaccagcccggtcggcggtcggtggactgggtgaaggtgcggcatgtccga
cggcagagtgtgctcgtcggcgggtgggagcccggcaccggtcggcgcgccgaccggata
ggggccctgctcgtcggtgtcgccacgccggccggcccccgctacgccgggcaggtcggc
accggcttcagcgaagcgacgctcgaccggctggccgcgttgctggcgccgttgcgccgc
tcggaccctccgcttcgggatgtccccgccgaggtcgctcgcggcgccgtctgggtggat
cccgagttgatcgccgaggtcgagttcacctcgtggacgacggacggccggctacgtcac
ccgtccttccaagggctgcgcatcgacatctcccccgccgacaccgcccgtatggaggag
acctga
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