Flavobacteriaceae bacterium 3519-10: FIC_01168
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Entry
FIC_01168 CDS
T00953
Name
(GenBank) ATP-dependent DNA ligase family protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
fba
Flavobacteriaceae bacterium 3519-10
Pathway
fba03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
fba00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FIC_01168
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fba03400
]
FIC_01168
Enzymes [BR:
fba01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FIC_01168
DNA repair and recombination proteins [BR:
fba03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
FIC_01168
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
DNA_ligase_OB_2
GH3
Motif
Other DBs
NCBI-ProteinID:
ACU07618
UniProt:
C6X5D0
LinkDB
All DBs
Position
complement(1251232..1253100)
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AA seq
622 aa
AA seq
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MLCGTADKPFSSSDWAFEIKWDGYRAVADTRNGIQLYSRNGLSYLEKFRKITNSLKLQNH
EMVIDGELVAYDDKGKPNFQWLQRIGENPNLTVIYQVFDLLWLNGHSTENMNLLQRKELL
KEALVETEFIKYHDHVVEKGEDFYRLVESLELEGMIAKKIESTYQPGLRSGDWLKIKSLQ
TEEVLICGFTAPKGGRKKFGSLILGRYLGGELVFCGHTGTGFSDKILVELHKKMEPLIIS
DSPFEKIPKTNEAATWIKRELVAEIKFTELTDDHIFRHPVFMRLRDDINPKDLSFKEEPK
AENNEVPDTVPIKKPAVKRENEQLKKIGKQEVKITNQNKIYFPKDGVIKGDVISYYQSVA
DYILPYLKSRPQSMNRFPNGIDGMSFYQKDASDEIPSWIETEKVHSESNDKMINYILCNN
EATMAYLNNLGCIELNVWTSRVETIDKPDYLVLDLDPSDNNTFEDVIETAQVVKKIMDKG
KIDGYCKTSGSSGIHIYIPAGAQYSFDQVKDFAHLMMQMVQQELPDITTLERTLQKRDKG
KIYLDYLQNRRGQTLASVYSLRPKNGAPVSMPIEWDELKIGLKPTDFNIENAMERLKTKG
DLFKPVLGKGFDMLTAIDLLAK
NT seq
1869 nt
NT seq
+upstream
nt +downstream
nt
atgctctgcggaacagcggacaagccattcagttcctccgactgggcttttgagattaaa
tgggacggctaccgcgccgtcgccgacacgcgcaacggtattcagctttattcgcgaaac
ggactctcctaccttgagaaattcaggaaaataacaaattcattaaagcttcaaaatcac
gaaatggtgattgacggtgaactggttgcgtatgacgataaaggcaaacccaatttccag
tggctgcagcgcattggcgaaaacccaaacctgaccgtaatttatcaggtttttgatttg
ctttggctgaacggacattccaccgaaaacatgaatctgcttcagcgcaaggagttgctt
aaagaagctcttgttgaaacagaatttattaaatatcacgatcatgttgtagaaaaaggc
gaagatttctacaggcttgtcgaaagtttggagcttgaaggcatgatcgcaaaaaaaatt
gaaagcacctatcaacctggcctgcgaagcggcgactggctgaagataaaaagcctgcag
accgaagaagtactgatctgcgggttcacggcaccgaaaggcggccgcaaaaaattcggg
tcacttattttaggccgttatctgggcggtgaattggttttctgtgggcacacgggcacg
ggtttcagcgacaagatacttgttgaacttcataagaaaatggaaccgctgatcatttcg
gattcgccattcgaaaaaattccgaaaacgaacgaagcggcgacctggataaaacgtgag
cttgtcgccgaaattaaattcaccgaactcaccgacgatcatattttcagacatcccgtg
tttatgcgccttcgcgatgatatcaacccaaaagatttatccttcaaagaagaaccaaag
gcagagaataatgaagttcctgacactgtacccattaaaaaaccggctgtgaaacgcgaa
aatgagcaactcaaaaaaatcggaaagcaagaagtaaaaattacgaaccagaataaaata
tattttccaaaagacggcgttatcaaaggcgacgtgatttcgtattatcaaagtgttgca
gactatattctgccctatctcaagagccgtccacaatcgatgaaccgcttcccgaacggc
atcgacggcatgagtttctaccagaaagacgcgtcagacgaaataccctcatggatcgaa
accgaaaaagtgcattcggaatccaacgacaagatgatcaactacatcctttgcaataac
gaagcgacgatggcctacctcaataatctgggctgtattgaacttaatgtgtggacgagc
cgcgttgagactattgataagccggattatctcgtgctcgatcttgatccttccgataac
aacacgttcgaagacgtcatcgaaaccgcgcaggttgtaaaaaaaatcatggataaagga
aagattgacggctactgcaaaacgtcgggctcgtccggcattcatatttacattccggca
ggcgcgcagtattcatttgatcaggttaaagatttcgcgcatctgatgatgcagatggta
cagcaggaacttcccgatatcactacgctcgaacgcacgctgcagaaacgcgacaaaggc
aagatctacctcgattatctgcagaaccggcgcggacagacacttgcgagcgtgtacagt
ctgaggcccaaaaacggtgcgccggtctcgatgccgattgaatgggacgaacttaaaatt
ggccttaagcccacggatttcaatatagaaaatgcaatggaaaggctcaaaaccaaaggt
gatctgttcaaacctgtgctcggcaaaggattcgatatgctgacggcgattgaccttttg
gcaaaataa
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