Aureibaculum algae: FF125_01015
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Entry
FF125_01015 CDS
T06009
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
fbe
Aureibaculum algae
Pathway
fbe03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
fbe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FF125_01015 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fbe03400
]
FF125_01015 (mfd)
Enzymes [BR:
fbe01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FF125_01015 (mfd)
DNA repair and recombination proteins [BR:
fbe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FF125_01015 (mfd)
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
SBP_bac_3
Motif
Other DBs
NCBI-ProteinID:
QCX37085
UniProt:
A0A5B7TLC7
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All DBs
Position
complement(244166..247516)
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AA seq
1116 aa
AA seq
DB search
MSKQAIVKLYEQSDNVKQIATLLKQENQKLFLSHLAGSSLSFVISNTFLSVEKPYLLIFN
DKEEAAYYLNDLEQLLGDKNVLFYPGSYRRPYHPDASGEETDNANILLRSEVLNRINSRK
KPAVIVTYPDALFEKVVTKSELDRNTLKLSVGMAISLDFVNEMLFEYHFKRVDFVTEPGE
FAVRGGIVDVFSFSNDEPYRIEFFGDEVDSIRTFDIETQLSIEKLKKISILSNVENKKLQ
EKRESFLKYISSKTVVFAKNTDLIFDSLNGLFEKAKSAFSEQKQVVKLAEPEELFCDGHY
IKNQLQEFNLVTFGNKQHGENQAIEISFQIKPQPSFNKQFDLLINNLNENTKIGLKNYLF
CANEKQAQRFHDIFKDIDENVKYKTLVFPIYEGFIDNDLKIACYTDHQIFERYHKFRLKT
GFSKKQSITLKELTNLEIGDYVTHMDHGIGKFGGLQKIDVEGKKQEAIKLVYGDRDILYI
SIHSLHKISKFSGKEGKPPKIYKLGSGAWKKLKQKTKTRVKQVAYDLIQLYAKRKLQKGY
QSKPDSYMQLELESSFMYEDTPDQLSATQDVKSDMESQQPMDRLVCGDVGFGKTEVAIRA
AFKAVDNGKQVAVLVPTTILAFQHFRTFSERLKDLPVVVDYMNRFRTTKQRNEIIKGLES
GNIDIVIGTHQLVNKKVKFKDLGLLIVDEEQKFGVGVKDKLKTIKENVDTLTLTATPIPR
TLQFSLMAARDLSVINTAPPNRHPIETNVIRFSEETIRDAIQYEISRGGQVFFIHNRIEN
IKEVAGLIQRLIPDAKVAIGHGQMDGKKLEQLMMAFMNNEFDVLVSTTIVESGLDVPNAN
TIFINNANNFGLSDLHQMRGRVGRSNKKAFCYFITPPYHMMTDDARKRIQALEVFSDLGS
GLNIAMKDLEIRGAGDLLGGEQSGFINDIGFDTYQKILNEAIEELKENEFKDLYKDTSDK
PKPFVKEIQIDTDFELLFPDDYINSITERLKLYNELNDLNTEEELNIFEQQLIDRFGELP
VQAEDLLNSVRVKWLAKDIGFERLILKKKRMIGYFISDTQSSYYQTEMFTKVLQFVQKNP
TTSVMKEKETRNGLRLLLTFIRIDSIETALDVLRKV
NT seq
3351 nt
NT seq
+upstream
nt +downstream
nt
ttgagcaaacaagccattgttaaactttatgagcaatctgacaacgtaaagcaaattgct
acattattaaaacaagaaaaccaaaagctatttttatcgcatttggcaggttcttcattg
tcttttgttatttcaaacacttttttgtcggttgaaaaaccttacttactcatctttaac
gacaaagaagaagctgcttattatttaaacgatttagagcaactgttaggcgacaaaaat
gtacttttttatcctggttcttaccgtcgtccctatcatcccgacgcttcgggagaagaa
actgataacgctaatattttattacgttctgaagtacttaatcggattaattctcgtaaa
aaacctgcagtaatagttacttacccggatgctctttttgaaaaagtagttaccaaaagt
gaattggacagaaataccttaaaactgagtgttggtatggcaatttcgctcgactttgtc
aatgagatgctttttgaatatcattttaaacgtgttgattttgttactgaacctggagaa
tttgcagtaagaggtggtattgtagatgttttttctttttctaatgatgaaccttatcga
atagaattttttggcgatgaagtagatagtatcagaacttttgatattgaaacgcagcta
tctatagaaaaattaaagaaaataagtattttatcgaatgttgaaaataaaaaacttcaa
gaaaaacgagagagttttctaaaatacatttctagcaaaacagttgtttttgcgaaaaat
acagacttaatttttgatagcctaaacggactatttgaaaaagctaaatcggcattctca
gagcaaaaacaggttgtaaaattagcggaacctgaagaattattctgcgatggccattat
ataaaaaatcagctccaagagtttaacctggttacttttggcaataaacaacacggagaa
aatcaggccattgaaatttcatttcaaattaagccgcaaccttcatttaataagcagttt
gatttattaattaacaaccttaatgaaaataccaaaattggcttaaaaaattatcttttt
tgtgccaatgaaaagcaggctcaacgttttcacgatatttttaaagacattgatgaaaat
gttaagtataaaaccttggtttttccaatatatgaagggtttatagataatgatttaaaa
attgcctgttatacagatcaccaaatttttgaacgttatcataaatttcgtctgaaaact
gggttttctaaaaagcaatctattacgcttaaagaattaaccaatctagaaattggcgat
tatgtgacccatatggatcatggaattggtaagttcggcggactgcaaaaaatagatgtt
gaaggtaaaaaacaggaagctataaaactggtttatggagatagagatatactttatatc
agcatccattcactacataaaataagcaagtttagtggcaaagagggtaaacctcctaaa
atttataaattgggttctggtgcttggaaaaaactcaagcaaaaaactaaaactcgtgtt
aagcaagttgcatatgatttaattcaactctatgccaagcgaaaattacaaaaagggtat
caatctaaacccgatagctatatgcaattggaattggaatcgagttttatgtatgaagat
acgcctgaccaattatcggctacgcaagatgtaaagtccgatatggagagtcaacaacct
atggacagattggtctgtggtgacgttggtttcggcaaaacagaagtcgccattcgtgca
gcctttaaagcggtagataacgggaaacaagttgcagtattggtacctacaactattttg
gcgttccaacactttagaacattttctgaacggctaaaagatttacccgttgtggtagat
tatatgaaccgatttagaactaccaaacaacgaaatgaaattattaaaggtcttgaatct
ggtaacattgacattgttattggtacacatcaattggtaaacaagaaagtgaagtttaaa
gacttaggtttattaattgttgatgaagagcaaaaattcggcgttggtgtaaaagacaaa
ctaaagactataaaagaaaatgtggacacattaactttgaccgcgacgcctattccgcgt
accctacaattttcattgatggccgctcgtgatttatcagttatcaatacggctccaccc
aataggcatcccatagaaacaaatgttatccgctttagtgaagaaactattagggacgcc
attcagtatgaaatctctagaggcggacaggtattttttatccataaccgaatagaaaac
attaaagaagtggcgggactcatacaacgccttattccagatgctaaagttgccattggt
catggacaaatggacggaaaaaagttagaacaactaatgatggcttttatgaataatgag
tttgatgtacttgtttctacaactattgtggaaagcggactagatgtgcctaatgcgaac
actattttcattaataatgccaataatttcggattgtcagatttacatcaaatgcgaggt
cgtgttgggcgatctaacaaaaaagccttttgttattttataacaccaccataccatatg
atgacggatgatgccagaaaacgtattcaagcattagaagtgttctctgatttaggtagt
ggattaaatatagcaatgaaggatttagaaattcgtggagctggagatttattaggtggt
gagcaaagtggttttattaatgatattggttttgatacctatcagaaaatactaaatgaa
gcaattgaagaactgaaagaaaatgagtttaaagacttgtataaagacacttcagataag
cctaagccatttgtaaaagaaattcaaattgatacggattttgaattgcttttccctgat
gattatatcaactccataacggaaagactcaagttatataacgaattaaacgacttaaac
accgaagaagagcttaacatttttgaacaacaattgattgaccgctttggtgaattacca
gtacaagctgaagatttattgaatagtgttcgtgtaaaatggctggcaaaagacattggt
tttgaacgcctcattttgaagaaaaaaagaatgattggttattttatttccgacacgcaa
tcgagctattatcaaactgaaatgtttaccaaagtgttgcaatttgttcaaaaaaacccg
actacttctgtaatgaaagaaaaagaaaccagaaacggtttacgcctgttattgactttt
atcagaattgattctattgaaacggcgttggacgtgttgcgtaaggtttag
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