Flavobacterium cyclinae: LOS86_04365
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Entry
LOS86_04365 CDS
T08416
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
fcc
Flavobacterium cyclinae
Pathway
fcc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fcc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LOS86_04365 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fcc03019
]
LOS86_04365 (rny)
Messenger RNA biogenesis [BR:
fcc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LOS86_04365 (rny)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KhpA-B_KH
KH_2
Motif
Other DBs
NCBI-ProteinID:
UGS21866
LinkDB
All DBs
Position
complement(917308..918870)
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AA seq
520 aa
AA seq
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MDILGIIIGIVVGLAGGFGIAKFLEKSNVSNLIKNAKKEAASILKDAKTEAEAAKKDKIL
QAKEKFLELKAEHEQVILARDKKMAEAEKRTRDKESQISNELARAKKAADEAEAKINDYN
NKIEYLDKKQQEIDKLHRSQVEQLEAISGLSAEEAKNQLVESLKAEAKTNAMSFIQDTVE
EAKMTAQQEAKKIIINTIQRVGTEEAVENCVSVFNIESDDVKGRIIGREGRNIRALEAAT
GVEIIVDDTPEAIILSCFDPVRREIARLALHKLVTDGRIHPARIEEVVAKTAKQIDEEII
ETGKRTVIDLGIHGLHPELIKVVGRMKYRSSYGQNLLQHSREVAKLCGIMAAELGLNVKL
AKRAGLLHDIGKVPDTESELPHAILGMQWAEKYGEKEEVCNAIGAHHDEIEMKSLISPII
QVCDAISGARPGARRQVLDSYIQRLKDLEDIAFGFNGVKNAYAIQAGRELRVIVESEKVS
DEAAANLSFDISQKIQTEMTYPGQVKITVIRETRAVNIAK
NT seq
1563 nt
NT seq
+upstream
nt +downstream
nt
atggatatactaggtataataattggaattgtcgttggtcttgcaggaggttttggaatt
gctaaatttttagaaaaaagcaatgtttctaaccttattaagaatgcaaaaaaagaagca
gcttcgattttaaaagacgctaaaactgaagctgaagccgctaaaaaagataaaatttta
caagcaaaagaaaagtttttagaacttaaagcggaacacgaacaagtgattttagcacgt
gataaaaaaatggccgaagccgaaaaaagaacacgtgataaagaatcgcaaatctctaac
gaacttgctagagccaaaaaagcagctgatgaagcggaagctaaaatcaacgattacaac
aataaaatcgaatatttagacaagaaacaacaagaaattgacaaacttcacagaagtcaa
gtggagcaattagaagctatttctggtctatctgctgaagaagctaaaaatcaattggtg
gaaagcttaaaagctgaagctaaaacaaatgctatgtcgttcatccaagatactgtggaa
gaagctaaaatgacagcacaacaagaagctaagaaaatcatcatcaatacgatacaacga
gttggtactgaagaagcagttgaaaactgtgtttctgtatttaacattgaatcagatgat
gtaaaaggtagaatcattggtcgtgaaggtcgtaacattagagctttagaagctgcaact
ggagttgaaatcattgtggacgacacaccagaagctatcatcttatcgtgttttgatcct
gtgagaagagaaattgctcgtttagcattacacaaattagtaactgacggacgtattcac
ccagcacgtattgaagaagtggttgctaaaactgcaaaacaaatcgatgaggaaatcatt
gaaacaggtaaacgtactgtaattgatttaggtattcacggattacaccctgaattaatc
aaagtagtaggtagaatgaaataccgttcatcttacggacaaaacttattacaacactct
agagaagtagctaagttgtgtggtatcatggctgctgaattaggcttaaacgttaaatta
gcaaaaagagctggtttattacacgatataggaaaagtgccagatacagaaagtgaatta
cctcacgctattttaggtatgcaatgggctgagaaatatggtgaaaaagaagaggtttgc
aacgctattggagctcaccatgacgaaattgaaatgaagtcattaatttctccaattatc
caagtttgtgatgctatttctggagcacgccctggagcaagaagacaagttttagattct
tacatccaacgtttaaaagatcttgaagatatcgctttcggatttaatggagttaagaat
gcttatgctattcaagcaggtagagaattacgtgttattgtagagagtgaaaaagtatca
gatgaagcagcggctaacttatcatttgatatttctcaaaaaattcaaacggaaatgaca
tacccaggtcaagtaaaaatcacggttatcagagaaactagagcggttaatattgcgaag
taa
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integrated database retrieval system
