Falco cherrug (Saker falcon): 102050236
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Entry
102050236 CDS
T02911
Symbol
LIG4
Name
(RefSeq) DNA ligase 4
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
fch
Falco cherrug (Saker falcon)
Pathway
fch03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
fch00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
102050236 (LIG4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fch03400
]
102050236 (LIG4)
Enzymes [BR:
fch01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
102050236 (LIG4)
DNA repair and recombination proteins [BR:
fch03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
102050236 (LIG4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT
DNA_ligase_IV
DNA_ligase_A_C
BRCT_2
RNA_ligase
Tox-REase-9
mRNA_cap_enzyme
SKA1
Motif
Other DBs
NCBI-GeneID:
102050236
NCBI-ProteinID:
XP_005440996
LinkDB
All DBs
Position
Unknown
AA seq
912 aa
AA seq
DB search
MASAPASQPSPKKTVASRVPFADLCSTLERIQQCKSRPEKTKYFKDFLDSWRKFHDALHQ
NEKDVTDSFYPAMRLILPHLERERMAYGIKETMLAKLYIELLNLPKDGKDAAKLLNYRAP
AGSRVDAGDFAMIAYFVLKPRSPKQGRLTIEQVNEHLDTIANNNAAKNKGLLKKSLLQLI
TQSTALEQKWLIRMIIKDLKLGVSQQTIFSIFHPDAAELHNVTTDLEKVCRQLHDPSVSL
SDVSITLFSAFKPMLAAIADVQQIEKQMNNQLFYIETKLDGERMQMHKDGDVYKYFSRNG
FDYTQQFGASPLDGSLTPFIHKIFKSNIQNCILDGEMMAYNPETQTFMQKGNRFDIKRMM
EDSDLQTCFCVFDVLMVNDEKLGHEVLSKRYEILSSVFTPVTGRIHVVHKKSARTRKEVI
DALNEAIDNREEGIMVKDPMSTYKPDKRGEGWLKIKPEYVNGLMDELDLLIVGGYWGTGA
RGGMMSHFLCAIAETPPPNEKPSIFHSICRVGSGYTMKELHDLGLKLAKHWKPYHRRDPP
CNILCGTEKPEMYIEPCNSVIVQIKAAEIVTSDMYKTECTLRFPRIEKIREDKEWYECMT
SDMLEDLRRKAEGKLASKHLHIDDYSKPQEKKRKTVSKVRKIIGIAEQFKAPDLSSVNKV
SSVFEDIEFCVMTGTGKYSKSELESRIAECGGSVVQNPGLDTYCVIVGTENVRVKNIIAS
NKYDVVRAEWILQCLQHKMLVPWQPAFMIHMSPDTKEDFAREYDCYGDSYTADTDVAQLK
EVFSRMKDNKMMLLEKIAELEERYSWNSCQLSIFRGNTIYVDFYAVVNEPRTKIHGTTLS
IRALELRFYGAKVVPHLEEGVSHIVIGEDHSRVEEMKALRRTFGKKFKIVSELWVIQSVE
EGVPKNENQYLI
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atggcttccgcacctgcttcgcagccctctcctaaaaaaacggtggcttctcgagtgcct
tttgcggatttgtgttctactctagagcgaatacagcagtgtaaatctcgcccggagaaa
acaaaatatttcaaggatttcctggattcctggagaaaattccatgatgctcttcaccaa
aatgagaaagatgtcacagattctttttacccagcaatgcgacttattcttccacacttg
gaaagagaaaggatggcatacgggattaaagaaactatgcttgcgaagctgtatattgaa
ctgcttaatttaccaaaagacggaaaagatgctgcaaagcttttaaattacagagcacct
gctggctcacgtgtagatgctggagattttgcaatgattgcgtacttcgtattaaaacct
aggagcccaaaacaaggcagactgacaatagaacaagtcaatgaacacttagacacaata
gctaacaataatgctgctaaaaacaagggtctgttaaagaaaagtcttcttcagttaatt
acccagagcacagcactggaacaaaaatggctcatccggatgattataaaggatctaaag
cttggtgttagtcagcaaactatattttccatttttcatcctgatgctgctgaattacac
aatgtcacaactgatttggaaaaagtttgcagacaactgcatgatccctctgtctcactt
agtgatgtttctatcacgttgttttctgcctttaaaccaatgcttgctgcgattgctgat
gtccagcaaattgagaaacaaatgaataaccagctgttctacatagaaactaagctggat
ggtgaacgtatgcagatgcacaaagatggagatgtgtataaatatttttcccgaaatggg
tttgactatactcagcagtttggcgcctccccccttgatggttcattaacgccgtttatt
cataagatatttaagagcaatatacagaattgcattctcgatggtgaaatgatggcttac
aatcctgagacacaaacctttatgcaaaaagggaacaggtttgacataaaaagaatgatg
gaggactctgatctgcagacctgcttctgtgtgtttgatgtattgatggttaatgatgag
aagttggggcatgaagtactaagcaaaagatatgaaatcttaagtagcgtatttacccca
gtaacgggcaggatacatgttgtacataaaaaaagtgccagaacaagaaaagaagtaatt
gatgctttaaatgaagcaatagataacagagaggaagggattatggtgaaagatcccatg
tccacctacaagcctgacaaacgtggggaaggctggttaaaaatcaagccggaatatgtc
aatgggttgatggatgaactagaccttttaattgttggtggttactgggggacgggcgca
cgtggtggaatgatgtctcattttctgtgcgctattgcagaaacaccccctccaaatgaa
aaaccttccattttccactctatttgtcgtgttggctctggctatactatgaaggaattg
catgatctgggtttgaaactggctaaacactggaagccctaccataggagggatcctccc
tgtaacattttgtgtggaactgaaaaacctgaaatgtacattgaaccttgcaactctgtc
atagttcagatcaaggcagccgagattgttaccagtgatatgtacaaaactgagtgcact
ttgagattcccccggattgagaagataagagaggacaaagaatggtacgagtgcatgact
tcagacatgttagaagacctcagacgcaaagcagaagggaagctggcatctaagcacctt
catatagatgattatagtaagccacaagagaaaaaaaggaaaactgtatcaaaggtgagg
aagataattggaatagccgagcaatttaaagctcctgatctttctagtgtaaacaaggtt
tcaagtgtatttgaagatattgagttttgtgttatgacaggaacgggaaaatactcaaag
tctgaactggaaagcagaatagccgaatgtggtggcagtgtggtacagaacccagggctg
gatacttactgtgtcattgtaggaactgagaatgtcagagtgaaaaatatcattgcttcc
aacaaatacgatgtggtgagggcagagtggatccttcagtgtttacaacacaaaatgctg
gtgccttggcagccagcctttatgattcacatgtctcctgacacaaaagaagattttgct
cgcgagtatgattgttacggagacagctacacagcagacacagatgttgcacaactgaag
gaagtgttctcaagaatgaaagacaataagatgatgcttttggagaagattgcagagtta
gaagaacgttattcatggaacagctgtcagctcagtatattcagaggaaacactatttat
gtggacttttatgctgttgttaatgagcccagaacaaaaatccatggaacaacactatca
attagagctttggagctccgtttttatggtgcaaaagtagttcctcaccttgaagagggt
gtctcgcatattgttataggagaagatcattcccgggtagaagagatgaaagcactcagg
agaacatttgggaaaaaatttaaaattgtatctgagctgtgggtaatacagtcagtggag
gagggagttccaaagaatgaaaaccagtacttgatttaa
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