Falco cherrug (Saker falcon): 102054215
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Entry
102054215 CDS
T02911
Symbol
SNRNP200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
fch
Falco cherrug (Saker falcon)
Pathway
fch03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
fch00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102054215 (SNRNP200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
fch03041
]
102054215 (SNRNP200)
Enzymes [BR:
fch01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
102054215 (SNRNP200)
Spliceosome [BR:
fch03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
102054215 (SNRNP200)
Complex C
U5 SnRNP specific factors
102054215 (SNRNP200)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
PhoH
SWI2_SNF2
DUF603
Hikeshi-like_C
Terminase_6N
Motif
Other DBs
NCBI-GeneID:
102054215
NCBI-ProteinID:
XP_005438170
LinkDB
All DBs
Position
Unknown
AA seq
2136 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQRTK
PQMQEERRAKRRKRDEDRHDINKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFI
QAALGDQPRDILCGAADEVLAVLKNEKLRDKERRKEIDLLLGQTDDTRYHVLVNLGKKIT
DYGGDKEIQNMDDNIDETYGVNVQFESDEEEGDEDIYGEVRDEASDDDMEGDEAVVRCTL
SANLVASGELMSSKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDR
ECENQLVLLLGFNTFDFIKVLRQHRMMILYCTLLASAQSEAEKERIMGKMEADPELSKFL
YQLHETEKEDLIREERSRRERVRQSRMDTDLETMDLDQGGEALAPRQVLDLEDLVFAQGS
HFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLVSVEKLPKYAQAGFEGFKT
LNRIQSKLYRAALESDENLLLCAPTGAGKTNVALMCMLREIGKHINIDGTINVDDFKIIY
IAPMRSLVQEMVGSFGKRLATYGINVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKG
GERTYTQLVRLVILDEIHLLHDDRGPVLESLVARAIRNIEMTQEDVRLVGLSATLPNYED
VATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQ
VLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPY
GFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGR
WTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDM
LNAETVLGNVQNAKDAVNWLGYTYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTA
ALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNETMQTYNQLLKPTLSEIELFRVFSL
SSEFRNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMAD
MVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFKKLPEEVV
KKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKV
ELTIAPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLVTFFVPVFE
PLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESL
YQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYIT
PMEALAEQVFLDWYEKFQERLNKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWK
QRKNVQNVNLFIVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDV
AHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAIMKHSPKKPVI
VFVPSRKQTRLTAINILTTCASDVQRQRFLHCAEKDLVPYLDKLNDNTLKETLVNGVGYL
HEGLTAMERRVVEQLFSSGAVQVMVASRSLCWGMNIAAHLVIIMDTQYYNGKIHAYVDYP
IYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEI
VTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGVSHRHLSDHLSELVEQTLSDLEQSK
CISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPI
RHHEDNLLRQLAQKVPHKLTNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAI
RLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVE
SVFDIMEMEDEDRNALLQLSDAQIADVARFCNRYPNIELSYEVVEKESIRSGGPVVVLVQ
LEREEEVTGPVIAPLFPQKREEGWWVVIGDSKSNSLISIKRLTLQQKAKVKLDFVAPATG
THNYTLYFMSDAYMGCDQEYKFSVDVKEAESDSDSD
NT seq
6411 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgtgaccgcgcggagcctgcagtacgagtacaaggcgaactccaacctcgtt
ctccaagctgaccgctcgctgatcgaccgcacccggcgggatgagccgacgggagaggtt
ctgtccttggtgggcaaactggaggggacccgcatgggggacaaggcccagagaaccaaa
ccccagatgcaagaggaaagacgagcaaagcggaggaagcgtgatgaagacaggcacgac
atcaacaagatgaagggttacaccctgctctccgagggtatcgatgagatggtgggcatc
atctacaaacccaaaaccaaggagacccgtgagacctacgaggtgttgctgagcttcatc
caggcggcccttggggaccagccgcgtgacatcctctgcggagccgctgacgaggtgctg
gcggtgctgaagaacgagaagctgcgcgataaggagaggcggaaggagatcgatctgctg
ctgggacagacggatgatacccgctaccacgtgctggtgaacctggggaagaagatcaca
gattatggtggagacaaagaaatccagaacatggatgacaatattgatgagacatacggg
gtgaatgtgcagttcgagtccgacgaggaggaaggcgatgaggacatttacggcgaagtg
cgtgacgaggcgtccgatgatgacatggagggagatgaagccgtggtccgttgcaccctc
tcggccaaccttgtggcgtcgggtgagctgatgagttcaaagaagaaggatctgcatcct
cgagacatcgatgctttctggctccagcgacagctgagccgcttctacgacgatgccatt
gtttcccagaagaaagctgatgaagtgctggagatcctgaagaccgcaagcgatgaccgg
gaatgcgagaaccagcttgttctgctcctgggctttaacaccttcgacttcattaaagtc
ctgcgacagcaccggatgatgatcctctactgcactttgctggccagtgcacagagtgaa
gctgaaaaagaaaggatcatggggaagatggaagcggatcccgagctgtccaagttcctc
tatcagctgcatgagacggagaaggaggatctcatccgggaggaacggtctcgccgggag
cgtgttcgtcagtcccggatggatactgacttggagaccatggatctggaccaaggagga
gaggcactggctccccggcaggtgctggacttggaggatctggtgtttgcccaaggtagt
cacttcatggccaacaaacgatgccagctccccgatggctccttccgcaggcagcgcaag
ggctacgaggaggtgcacgtgcctgccctgaagccaaagccttttggctccgaagagcaa
ttggtttctgtggaaaagctgcccaaatacgcccaggctggatttgaggggtttaaaacg
ctgaaccggattcagagcaagctctaccgcgccgcgctggagtcggatgagaacttgctc
ctgtgtgctcccacgggtgctggcaagacgaacgtggcgctgatgtgcatgttgcgagaa
atagggaagcacattaatatcgacgggaccatcaacgtggacgatttcaagattatctac
atcgcacccatgaggtccttggtgcaggagatggtgggcagctttgggaagcgcctggcg
acgtacggcatcaacgtggccgagctgacgggggatcaccagctgtgcaaggaggaaatc
agcgcgacccagatcatcgtctgcaccccggagaagtgggacatcatcacccgcaaggga
ggagaacgcacttacacccagctggtgcggctggtcatcctggatgagatacacctcctg
catgatgaccgagggcccgtcctggagtccttggtagccagagccatccgcaacatcgag
atgactcaagaggacgtgaggctcgttggtttgagtgccaccctccccaactatgaggat
gtggcgacgttcctgagagtggacccggccaaaggcttgttctattttgataacagcttc
cgaccagtgcccctggagcagacctatgtgggtattacagagaagaaagcaatcaaacgc
ttccagataatgaatgagatcgtttatgagaagattatggagcatgctggaaagaatcag
gtgctggtgttcgttcactccaggaaggagaccgggaagacggcccgggccatcagggac
atgtgcctggagaaagacaccctgggtcttttcctgcgggagggctcagcctccaccgag
gtgctgaggaccgaagctgagcagtgcaagaacctggagctgaaggatcttcttccttac
ggcttcgccattcaccacgccgggatgacgcgagtggatcggacgctggtggaggatctg
tttgctgacaagcacattcaggtgctggtgtccacagccacgctggcctggggtgtgaac
ctccctgctcacaccgtcatcatcaaggggacgcaggtgtacagccctgagaaagggcgc
tggaccgagctgggtgctctggacatcctgcagatgctggggcgtgccggaaggcctcag
tacgacaccaaaggagaggggatcctcatcacatcccacggcgagctgcagtactacctg
tccctgctcaaccagcagctccccattgaaagtcagatggtgtcgaagctcccagacatg
ctgaatgcggagactgtgctcggcaatgtccagaacgccaaggatgcggtgaattggctg
ggctatacctacctgtatatccggatgctgcgctcccccacgctctacgggatatcccac
gacgatctgaagggggatccgctgctggaccagcgccgcctggatctggttcacactgca
gccctcatgttggacaagaacaacctggtgaagtacgacaagaagacggggaactttcag
gtgacagagctgggccgcatcgccagccactactacatcaccaacgagacgatgcaaact
tacaaccagctcctgaaacccaccctgagcgaaatcgagctgttccgcgtcttctcgctg
tcctcggagttcaggaacatcaccgtgagggaggaggagaagctcgagcttcagaaattg
ctggagcgagttcccatcccggtgaaggagagcatagaggagcccagtgccaagatcaac
gtgctcctccaggccttcatctcccagctgaagctggaagggtttgctctcatggcagac
atggtgtacgtcacgcagtccgccgggcggctgatgcgtgccatcttcgagatcgtcctg
aaccgtggctgggcacagctcactgataagaccctcaacctctgcaagatgattgacaaa
cggatgtggcagtccatgtgccctttgcgccagttcaagaagctgcctgaagaagtggtg
aagaaaatcgagaagaagaatttcccctttgaacggctctacgacttaaaccataacgaa
ataggggagctgatccggatgcccaagatgggcaagacaatccacaaatacgttcacctg
tttccaaagctggagctctcggtccacctgcagcccattacccgctccaccctgaaagta
gagctcaccatcgctcccgacttccagtgggatgaaaaggtacacggttcatccgaagct
ttctggatcctggtggaggatgtggacagcgaagtgatcctgcaccacgagtactttctg
ctgaaagccaagtacgcgcaggacgagcacctcgtcaccttcttcgtgcccgtgttcgag
ccgctgcccccgcagtacttcatccgggtggtctctgaccgctggctctcctgtgagacc
cagctgcccgtttccttccgccacctgattctccctgagaagtaccctcctccgaccgag
ctgctggatctgcagccgctgcccgtgtcagctctgcgaaacagcgccttcgagagcctc
taccaggacaagttccctttcttcaaccctatccagacccaggtgtttaacaccgtttat
aacagcgacgacaacgtctttgtgggtgcccccacgggaagcggaaagaccatttgcgct
gaatttgccatcctgaggatgttgctccagaactcggagggacgctgcgtgtacatcact
cccatggaggccctggcagagcaggtcttcttggactggtacgaaaagttccaggagcgt
ctcaataagaaggtggttttgctgacgggggagaccagcaccgacctgaagctgctgggc
aaagggaacatcatcatcagcaccccggagaaatgggatatcctctcgcgacgctggaaa
caacgcaagaacgtccagaacgtcaacctcttcatcgtggatgaagtgcatctcatcggg
ggtgaaaatgggccggtgctggaggtcatctgctcccgcatgcgctacatctcctcccaa
attgagcgccccatccgcatcgtggccctcagctcatccctgtccaacgccaaggacgtg
gcccactggcttggctgcagcgccacttccaccttcaacttccaccccaacgtccgcccc
gtgcccctggagctgcacatccagggcttcaacatcagccacacgcagactcgcctgctc
tccatggccaagcccgtctaccacgccatcatgaaacactcgcccaaaaagccggtcatc
gtcttcgtcccctcccgcaagcagacgcgcctgactgccatcaacatcctcaccacgtgc
gcttccgacgtccaaaggcaaaggttcctgcactgcgccgagaaggatctggtaccctac
ctggacaagctgaatgacaacactctgaaggagacgctggtgaacggggtgggctacctg
cacgaggggctgacggccatggaacggcgagtggtggagcagcttttcagctccggtgcg
gttcaggtgatggtggcctcccgcagcctctgctggggtatgaacatcgccgctcacctg
gtgatcatcatggacacgcagtactacaacggcaagatccacgcgtacgtggattacccc
atctatgacgtgctgcagatggtgggccacgctaatcgcccgctgcaggacgacgagggc
cgttgtgtcatcatgtgccaggggtccaagaaggatttcttcaagaaattcctctacgag
cccctgccggtggagtcgcacttggatcactgcatgcacgatcacttcaacgccgagatt
gtcaccaagaccatcgaaaacaagcaggacgctgtggattacctcacctggacgttcctc
tatcgcaggatgacgcagaatcccaactactacaacctgcaaggcgtgtcccacaggcac
ctctcggatcacctctccgagctggtggagcaaaccctcagcgacctggagcagtccaag
tgtatcagcatcgaggatgagatggacgtggctcctctgaacctggggatgatcgctgcc
tactactacatcaactacaccaccatcgagctcttcagcatgtccctcaacgccaagacc
aaggtgcgagggctgattgaaatcatctccaacgctgccgagtacgagaacatccccatc
aggcaccacgaggacaacttgctgcggcagctggcccaaaaagtcccccacaagctgacc
aaccccaaattcaacgacccccacgtcaagaccaacctgctgctgcaggctcacttgtcg
cgcatgcagctgagcgccgagctgcagtcagacaccgaggaaatcctcagcaaggcgatc
cggttgatccaggcctgcgtggacgtcctgtccagcaacgggtggctcagccccgcgctg
gccgccatggagctggcgcagatggtgacgcaggccatgtggtccaaggattcctacctc
aagcagctgcctcacttcacctccgagcacatcaagcgctgcaccgacaagggggtggag
agcgtcttcgacatcatggagatggaggatgaggaccgcaacgccctgctgcagctctcg
gatgcccagatcgccgacgtcgcccgcttttgtaaccgttaccccaacatcgagctctcc
tacgaggtggtggagaaggagagcatccgcagcggggggccggtggtggtgctggtgcag
ctggagcgtgaagaggaggtcaccgggcccgtcatcgctccccttttcccgcagaaacgc
gaggagggctggtgggtggtgatcggcgactccaaatccaacagcctcatctccatcaag
cggttgacgctgcagcagaaagccaaggtgaagctggatttcgtagccccggctacgggg
acgcacaactacacgttgtatttcatgagcgacgcctacatgggctgcgaccaggagtac
aaattcagcgtggacgtcaaggaggcggaaagcgacagcgactccgactaa
DBGET
integrated database retrieval system
