Frederiksenia canicola: A4G17_04525
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Entry
A4G17_04525 CDS
T06481
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
fcl
Frederiksenia canicola
Pathway
fcl03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
fcl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
A4G17_04525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fcl03400
]
A4G17_04525
Enzymes [BR:
fcl01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
A4G17_04525
DNA repair and recombination proteins [BR:
fcl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
A4G17_04525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PDDEXK_1
AAA_30
AAA_18
AAA_12
AAA_25
ResIII
Rubredoxin_C
Motif
Other DBs
NCBI-ProteinID:
QIM64750
LinkDB
All DBs
Position
925093..928683
Genome browser
AA seq
1196 aa
AA seq
DB search
MKTLDPISIPLNRASLIEASAGTGKTYTMANLYLRLVLGVECEPLMVEQILVVTFTKAAT
QELRDRIRAKLRNVAKWFADPDSDDARKNLADPFLARIYQQIQPNLAEALLRLQIAEREM
DLASIYTIDSFCQKMLFQYAFDSGVRFDINLQTDERELLQRLSEETWRELFYPASLEETA
LVARLLQSPENALNKVKGYLSGILPPLTESQQRELNEDYAQQAGRFEQFLATARAYWQTN
EGDIIAPIQTAFEQQNADKKIKILNGVSYKEESFKNKWLPTIRAWATNRDWSFPSKELSY
FSQSMLNAKASKGAEILRSSHFVQWDEFIQQFETFSDISNQIETKLLYRFFQHLRQKLTD
YKHTHLEKNFSDMLTYFYEALQGEKGDVLAGKIRQQFGFAMIDESQDTDNIQYQIFKRIF
LDGDKPYGFIMIGDPKQSIYKFRGADIFAYLDAAKQVDAKFTLAKNWRSLPAIVETVNKL
FTLPDNKPAFLYPDITFSAVDFKQSNEKLLGNQQETNLYLLAKGYNTTQAAEHCAEQIVL
QLNAAQKGEKWVLSEQNETLVERELTPKDIAILVRSHDEAAEIKRSLAARNLQSVYLSER
NSVYQSQDAADLAVILNACLHPFSSRALLAALGTSLWGLTAADLFQIKNNETEWDSYVEH
FAHYFQVWQLQGVLPMLHKLFIQQQIIARLNSHDDADRRITNILHLAELLQEKMDSVENE
SSLLRWFHEQIANPNGDSDEQVLRLESEADLIKIITIHKSKGLEYPVVWLPFIAKNAQGA
RAASMAIYRDEENQVRWSFNSGDEQIKQYQDQAEHAEDLRLLYVALTRAKYQLHLVLPEV
WGDKWNAMHYLLAQGDIQKALNTRDAFERKGIAYQAVSLAETFATSRFEPTSTEMNDVEA
KTFQGKIRERGSVTSFTALQAQHERLQHVLRNQPLVGWQDMALDYDSHVIATTSIELEQQ
GERNPFQFPHSTNVGNVLHRFFERQDFQQPITHDSIQALCEQLNLDENWIEPVLQWFERI
LVTPIGDKPFRLSQISQATRLTEWQFYLRLGNRKALPQLNALLKQHSRLAKQLPDLQLLQ
VEGFVRGFVDCIVQVENQFYVIDYKSNFLGYLPQDYAREKIEKTMGQYRYDLQYLLYTLA
VHRYLRSRLGQNYDYQRDFGGIAYLFLRGMDGSHNSGVYFDKPSGVLIDAMDELFG
NT seq
3591 nt
NT seq
+upstream
nt +downstream
nt
atgaaaactcttgatcctatctcaattccgcttaaccgagcgagtctaatagaagcttcc
gcaggaaccgggaaaacctacaccatggcaaatctttatttgcgattggtgcttggcgtg
gaatgtgagccattaatggtcgagcaaattttggtcgtgacctttaccaaagccgcaacg
caagagttgcgggatcgtattagagccaagttacgcaatgtggctaaatggtttgcggat
ccagacagtgacgatgcccgcaagaatttggcagatccgtttttggcaaggatctatcag
caaattcagccgaatttggcggaagccttgctccgcttacaaattgcagagcgagaaatg
gacttggcaagcatttacaccattgatagtttttgccagaaaatgctttttcagtatgcg
tttgattcaggtgtgcggtttgatattaacttacaaaccgatgagcgagagttattacaa
cgcttaagtgaagagacatggcgagagctgttttaccccgcaagtttggaagaaacggcg
ttggttgcaaggcttctgcaaagccctgaaaatgcgttaaataaagtgaaaggttattta
tcaggtattttgccgccgctgacagaatctcaacagcgtgaactaaacgaagactatgcc
caacaagcgggtagattcgagcaatttcttgcaaccgccagagcgtattggcagacgaat
gaaggggacattatcgcccctattcaaacggcgtttgagcagcaaaatgcggataaaaaa
atcaaaattctcaatggtgttagctataaagaagaaagttttaaaaacaaatggttacca
acgattcgtgcctgggcgacaaaccgtgattggtcgtttccaagtaaagagttgagctat
ttcagtcaatccatgttgaatgcgaaagcaagcaaaggtgcggagatattacgtagttcg
cattttgttcaatgggatgagtttatccagcagtttgagacatttagcgacatttcaaac
caaattgaaaccaaattgctctatcgttttttccaacatcttcgccaaaaactcacagac
tataagcatactcatttagaaaaaaatttcagcgatatgctgacctatttttatgaggcg
ttgcaaggagaaaaaggcgacgtgttggcgggcaaaatccgccagcagttcggttttgcc
atgatcgatgaatcacaagataccgacaacattcaatatcaaatcttcaaacgcattttc
ttagacggcgataaaccctatggattcattatgatcggcgatccgaaacagtcgatctac
aaattccgtggagcggatatttttgcttatcttgatgcggcgaagcaggtggatgcgaaa
tttaccttagcgaaaaactggcgatctctccccgccattgtggaaacggtgaacaaactt
tttactctgccggacaataaacctgcttttctctatcctgacatcaccttcagtgcagtt
gattttaaacaaagtaatgaaaaattgcttggaaatcaacaagaaacgaatctctatttg
ctggcaaaagggtataacacaacacaagcggcagaacattgtgcagagcaaattgtgttg
cagctaaatgcggctcagaagggcgaaaaatgggtgttgagcgaacagaatgaaaccttg
gtggagcgggaattaacaccgaaagacattgcgattttagtccgctctcacgacgaagct
gcggagatcaagcggtcacttgcagctcgaaatttgcaatcggtttacctttctgaacgc
aatagtgtttatcagtcgcaagatgcggcggatttagcggttatcttaaatgcctgttta
catcctttttcgtcacgagcgttattggcagcacttggcacttctctttggggactaact
gctgcggatctttttcagatcaaaaataacgaaactgagtgggatagttatgttgaacat
tttgctcattatttccaagtgtggcagcttcaaggggtgttgccgatgttacataaatta
tttattcagcagcaaattattgctcgtttaaatagccacgatgatgctgacaggcggatc
accaatattctccacctagccgagttgttacaagaaaaaatggacagcgtagaaaatgaa
agcagtttattacgttggtttcatgagcaaatagcgaatccaaatggcgacagtgatgag
caagttttgcggctggaaagtgaagcggatctgatcaaaattatcacgattcataaatct
aaaggattggaatatcccgtggtatggctgccgtttattgccaaaaatgctcaaggagca
cgagcggcgagtatggcaatctatcgcgacgaagagaatcaagtgcggtggagtttcaac
agtggcgatgagcaaatcaagcaatatcaagaccaagcagagcatgccgaagacctgcga
ttgctgtatgtggcattaactcgagcaaaatatcagctccatttagtcttacctgaagtc
tggggcgataagtggaatgcaatgcattatttgttagcacaaggggacattcaaaaagcg
ttgaatacacgtgatgcttttgaacgtaaaggcattgcctatcaagcggtcagtttagcg
gaaacgtttgcaactagccgttttgaaccaacaagtacagagatgaatgacgtggaagcc
aaaacgtttcaagggaaaattcgggagaggggcagtgtgaccagttttaccgccttgcaa
gcacaacatgagcgtttgcaacatgttctgcggaaccaaccgcttgttgggtggcaagat
atggctttggactatgatagtcatgtcattgcaacgacctcaatagagctggagcagcaa
ggcgaacgcaatccatttcaatttccacatagcacgaatgtggggaatgtacttcaccgc
ttttttgaacggcaggattttcagcagccaattacgcacgacagtattcaagccttgtgc
gaacagctcaatttagatgaaaattggattgagcctgtcttgcaatggtttgagcgaatt
cttgtcactccgattggagataagccgtttcgtctttcgcagatctctcaagccactcgc
ctaacagaatggcaattctatttacgtttgggtaaccgaaaagcgttacctcaactaaac
gcattactcaagcaacacagccgtttggcaaaacagctgcctgatttgcaattgttacag
gtggaagggtttgttcgtggctttgtggattgcattgtgcaagtggaaaatcagttctat
gtgatagattataaatcgaattttcttggatatttaccacaggattatgcacgagagaaa
attgaaaaaacgatggggcaatatcgttacgacttgcaatacttgctctatacgttggct
gtacatcgctatttacgttctcgtttggggcagaattatgattatcaacgggattttggc
ggtattgcgtatctgtttttacggggaatggatggttctcataatagtggcgtttatttt
gataaaccaagtggtgtactgattgacgcaatggacgagttgtttggctaa
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