Flavobacterium anhuiense: BB050_02761
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Entry
BB050_02761 CDS
T04718
Name
(GenBank) Putative DNA ligase-like protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
fjg
Flavobacterium anhuiense
Pathway
fjg03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
fjg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
BB050_02761
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fjg03400
]
BB050_02761
Enzymes [BR:
fjg01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
BB050_02761
DNA repair and recombination proteins [BR:
fjg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
BB050_02761
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
RNA_ligase
DNA_primase_S
mRNA_cap_enzyme
Alpha_TIF
DUF4817
Motif
Other DBs
NCBI-ProteinID:
AOC95856
LinkDB
All DBs
Position
complement(3090763..3093324)
Genome browser
AA seq
853 aa
AA seq
DB search
MSLSKYNQKRDFKQTREPKGKIEKSASELIFVVQKHAASHLHYDFRLEMDGVLKSWAVPK
GPSMDPEVKRLAMMVEDHPYSYKDFEGTIPEGNYGAGDVIVWDNGTYTSDEKTASDEKKL
LSDLAKGHLSFILKGKKLKGEFSLVKLHGKQENAWLLIKKNDKYASEEDILEKNKSVISK
RSLEQLVEKSEKLTSKSEEKTTEKKAVKKKSNPKADIAEFLKPMLASVSEKPFDDDEWIF
ENKYDGYRTIAVINPQQVDLFSRNELSFNANFKPIAEELKQIDHTVVLDGEIVVENDAGR
ADFQLLQNYMKTGIGNLKYYVFDLLNLDGNLITELSLLERKELLKILFNKYPFSNVSYSE
HTLGDGIKQFEKAVKNKTEGIIAKRADSTYTINRRSTNWLKIKTANEEEAIIIGITEPRN
SRKYIGALLLGQYDGKKLQYIGKCGTGFTESTLKDLYTKLEPLFTAKSPLDEKIPIRDKI
QWVNPKVVCQVKFSEWTQDQHLRHPVYLGIRIDKKAEEVFLSFPKDDSTQLNSDEMTITP
ENKKEKTENDYDLKVGKTVLHLTNQNKVYFPKDGITKGDIIHYYNEVSELILPYLKDRPE
SMNRFPNGIDSPSFYQKDVDVDKIPKWLKTKKVFSESNNADIDYLICNNKETLLYMANLG
CIEMNPWNSTTKHIQNPDWLVIDLDPAGNDFAPVITTALVVKEVLDELETECLCKTSGAS
GLHIYIPLGAKYDYDSIKILGELIAKEVQSRLPDITSIERSIKKRKNKLYIDFLQNRRGQ
TLAAPYSVRPKPGATVSTPLEWSEVNEKLHPSQFTIKNVLKRFEKKGDLWTPVLSKGADI
KKIIHKLEENQNV
NT seq
2562 nt
NT seq
+upstream
nt +downstream
nt
atgtcactgtctaaatacaatcagaaaagagattttaaacaaacgcgtgaaccgaaagga
aaaatcgaaaaatcagcaagcgagctaatttttgtcgtgcagaaacatgctgcgtcacat
cttcattacgattttaggttagagatggacggtgttttaaaaagctgggcagtgccaaaa
ggcccgtcgatggatcctgaagtgaaacgtctagctatgatggtcgaagatcatccgtac
agctataaagattttgaaggcaccatcccagaaggaaattacggtgctggagatgtaatt
gtatgggataacggaacctatacttctgatgaaaaaacggcttctgacgaaaaaaaatta
ttgagcgatctggcaaaaggacatttgagttttattttaaagggcaaaaaattgaaaggt
gaattttctttagtcaagcttcatggaaaacaagaaaatgcttggctgctaattaagaaa
aatgataaatatgcttctgaagaagatattttagagaagaataaatcggttatttctaaa
agaagtctagaacaattggttgaaaaatctgaaaagctcacttcaaaaagcgaagagaaa
actactgagaaaaaagcagtaaaaaaaaagtccaacccaaaagctgacatcgccgaattt
ttaaaacccatgcttgccagcgtaagcgaaaaaccttttgatgatgacgaatggattttt
gaaaataaatacgacggctacagaacgattgccgttattaatccgcaacaggttgatttg
ttcagcagaaacgagctttcttttaatgctaatttcaaacccattgccgaagaattaaaa
caaattgaccacactgtagttttggatggcgaaattgtagtagaaaatgatgctggaaga
gccgattttcagctgcttcaaaactatatgaaaacaggaatcgggaatctaaaatattat
gtttttgatttattgaatttggacggaaatctcattacggaactctctttattggaaaga
aaagaactgctcaaaattctctttaataaatatcctttttctaatgtttcttattctgaa
catacccttggcgacggaattaaacaatttgaaaaagccgttaaaaataaaactgaaggc
attattgccaaaagagcagacagcacttacactataaatcgaagaagcaccaactggctt
aaaataaaaacagcaaatgaagaagaagctattataatcggcattaccgaaccgcgaaat
tccagaaaatatattggcgctcttttactcggacaatacgatggcaaaaaactgcaatat
attggcaaatgcggaactggttttacagaaagcacgctaaaagatttatataccaaacta
gaaccgctatttacagccaaatctccgcttgacgaaaaaattccgatacgcgataaaatt
cagtgggtaaatccaaaagtggtgtgtcaggttaaattttcagaatggactcaagatcaa
catttaagacatcccgtttacctcggaattcgaattgataaaaaagcagaggaagttttt
ttatcattcccaaaagacgattcaactcaactaaattcagatgaaatgacaattacacca
gaaaataaaaaggaaaaaacagaaaacgattacgatttaaaagtcggaaaaacagttttg
catcttactaatcaaaacaaagtctatttcccaaaagacggcatcactaagggcgatatt
attcattattacaatgaagtttcagaattgattctgccttatttaaaagaccgtccagaa
tcaatgaaccgttttcctaacggaattgattcgccgagcttctatcagaaagatgttgat
gtagataaaattccgaaatggctcaaaaccaaaaaagtcttctcagaatctaataatgcc
gacatcgattatctcatctgtaataataaggaaacattgctttatatggcaaatttgggc
tgtatagaaatgaatccgtggaactcgacaaccaaacacattcagaatccagattggctg
gtaattgatttggatcctgcaggaaatgattttgctcctgtgataacaaccgctttggtg
gtgaaagaagttttagacgaattggaaaccgaatgtttatgtaaaacttcgggtgcttct
ggactgcatatctatattccgcttggcgcgaaatatgattatgattccataaaaattctt
ggcgaattaatagcaaaagaagtgcaatccagacttccagatattacttcaattgaaaga
agcatcaaaaagagaaaaaataaactgtacatcgatttcttgcaaaaccgacgtgggcaa
actttagcggccccgtattctgttcgaccaaaacctggcgcgacagtttctacgcctttg
gaatggagcgaagtgaatgaaaaactgcatccgtcgcaatttaccatcaaaaatgtcttg
aaacgttttgagaaaaaaggagatttgtggactcccgttttatcaaaaggagccgatatt
aaaaagattattcacaaactagaagaaaatcaaaacgtttaa
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