Bernardetia litoralis: Fleli_1002
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Entry
Fleli_1002 CDS
T02149
Name
(GenBank) DNA/RNA helicase, superfamily II
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
fli
Bernardetia litoralis
Pathway
fli03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
fli00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Fleli_1002
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fli03019
]
Fleli_1002
03009 Ribosome biogenesis [BR:
fli03009
]
Fleli_1002
Enzymes [BR:
fli01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Fleli_1002
Messenger RNA biogenesis [BR:
fli03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Fleli_1002
Ribosome biogenesis [BR:
fli03009
]
Prokaryotic type
rRNA helicases
Fleli_1002
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
Motif
Other DBs
NCBI-ProteinID:
AFM03450
UniProt:
I4AHL5
LinkDB
All DBs
Position
complement(1155788..1157641)
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AA seq
617 aa
AA seq
DB search
MEKTTETTKTKETTTESTEVTLKFTDMNLSDEVKRAVEVMGFESPSPIQAEAIPHLLEGK
DVIGQAQTGTGKTAAFGIPLIERIIKANENSEFDRNSRLPKGIILCPTRELAVQVAGELE
KLAKFRKDIFVTAVYGGESIEKQIRNLRRGVQIVVGTPGRTIDHIKRGTLKLEEITNIIL
DEADEMLNMGFKEDIELILQQITTEHQTVLFSATMPKPILQIAKKYQNSPEIVKVISKEL
TSDNIEQSFLPINPNYKTDVLVRLLAYNGWESMLIFCNTKQRTDEVAETLIQKGYAAEAL
HGDLAQHQRNLVMNKFRHGRVQILVATDVAARGIDVDNVEAVINYDVPLDPEYYVHRIGR
TGRAGNKGVSITFISGRREVYRLNDIERYSKSRIPQGTIPTQQEVLAKKQLRFMENLKAT
INDEKKAEELESYTALIEMLEIEGITSKQVAAAVLSLQLSNKPTDRLTEAEIWDTRDRRR
DGRGGRNDRGGRDRGGRNDRRGGGRDRDRGSRNRRDDRGGRDRNDRDRGSRPSYKDRGDR
ADMVRLRIDLGATENVRKGDILGAIAGETGMRGDKIGAIRVNEQESFVEVPQSDVDNVIR
VMNKSKIKGKKVEFEKA
NT seq
1854 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagacaacagaaacaacaaagacaaaagaaactacaactgaatcaacagaagta
acattgaaatttacagacatgaacctgtctgatgaagtaaaacgtgccgttgaagtaatg
ggatttgaatctccatcaccaattcaggcagaagcaattcctcatttattggaaggaaaa
gacgtaatcggacaagcacaaacaggaacaggaaaaacggctgcatttggtattcctctt
atcgaaagaatcatcaaagcaaacgaaaatagcgaatttgatagaaattcaagattgcca
aaaggaattattttgtgtcctacacgtgagcttgctgttcaggtagcaggagaattagaa
aaattagcaaaatttcgtaaagatatttttgtaacggctgtttatggtggcgaatctatt
gaaaaacaaattcgtaatcttagaagaggcgttcaaattgtagtaggaacaccaggtcgt
actattgaccatatcaaaagaggaactcttaagctagaagaaattacaaacataattttg
gatgaagctgatgagatgcttaatatgggcttcaaagaagatattgaattgattttacaa
caaatcacaactgaacaccaaacagttcttttctcggctacaatgccaaaaccaattctt
caaattgctaaaaaataccaaaacagtccagagattgtaaaggtaattagcaaagaattg
acaagtgataatatcgaacaatcattcttaccaatcaatccaaattacaaaactgatgtt
ttggttcgtttgttggcttataatggctgggaatcaatgcttattttctgtaatacaaaa
cagagaactgacgaagtagctgaaacgcttattcaaaaaggatatgcagcagaggcattg
cacggagatttggctcaacaccaacgtaacttggtaatgaataaattccgtcatggacgt
gttcagattttggtagcaacagatgttgcagctcgtggaattgatgttgataatgtagaa
gcagttattaattatgatgttcctttagaccctgagtattatgttcaccgtattggtcgt
acaggtcgtgcaggcaataaaggtgtttcaattacatttatttctgggcgtagagaagta
tatcgtttgaatgatattgagcgttattctaaatcaagaattcctcaaggaacaattcct
actcaacaagaagttttggctaagaaacaattacgcttcatggaaaacttaaaagcaact
atcaatgatgagaaaaaagctgaagaattagaaagctatactgctcttatcgaaatgtta
gaaatagaaggaattacttcaaaacaagtagctgctgctgttttaagtcttcaattatca
aacaaaccaactgaccgtcttactgaagctgaaatttgggatactagagatagaagaaga
gatggacgtggtggaagaaatgacagaggtggacgtgatagaggtggacgtaacgaccgt
agaggtggtggacgtgatagagatagaggcagccgtaaccgtcgtgatgacagaggtgga
cgtgaccgtaatgatagagacagaggaagccgtccttcttacaaagaccgtggcgaccgt
gctgatatggttcgtttgcgtattgatttgggagcaactgaaaatgtacgtaagggtgat
attttgggagctattgcaggagaaacaggaatgcgtggcgataaaatcggtgcaatccgt
gtaaatgaacaagaatcttttgtagaagtaccacaatctgatgttgataatgtaatcaga
gtaatgaacaaatctaaaataaaaggtaaaaaagttgagtttgaaaaagcataa
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