Fomitiporia mediterranea: FOMMEDRAFT_139987
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Entry
FOMMEDRAFT_139987 CDS
T03132
Name
(RefSeq) putative rRNA pseudouridine synthase
KO
K11131
H/ACA ribonucleoprotein complex subunit 4 [EC:5.4.99.-]
Organism
fme
Fomitiporia mediterranea
Pathway
fme03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
fme00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
FOMMEDRAFT_139987
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
fme03009
]
FOMMEDRAFT_139987
03032 DNA replication proteins [BR:
fme03032
]
FOMMEDRAFT_139987
Ribosome biogenesis [BR:
fme03009
]
Eukaryotic type
Sno RNPs
Box H/ACA snoRNPs
FOMMEDRAFT_139987
Prokaryotic type
FOMMEDRAFT_139987
DNA replication proteins [BR:
fme03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
Dyskerin complex
FOMMEDRAFT_139987
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DKCLD
TruB_C_2
PUA
TruB_N
UPF0113
U1snRNP70_N
Motif
Other DBs
NCBI-GeneID:
18672449
NCBI-ProteinID:
XP_007265458
JGI:
Fomme1_139987
LinkDB
All DBs
Position
Unknown
AA seq
525 aa
AA seq
DB search
MSKELTRGQVASAQLDGDYSIKSEESTPKLDTSQWPLLLKNYDKLLVRSSHFTPIPHGCS
PLKRDIQSYIKSGVINLDKPSNPSSHEVVAWLRRILRVEKTGHSGTLDPKVTGCLIVCID
RATRLVKSQQGAGKEYVCVLRLHAGLENPSALPRALQTLTGALFQRPPLISAVKRQLRVR
TIYESKLLEFDEKRNLAVFWVSCEAGTYIRTLCVHLGLLLGVGGHMQELRRVRSGAMSEN
DDIVTMHDVMDAQWMYDNTRDESYLRRVIRPLECLLVGYKRIVVKDSAVNAVCYGAKLMI
PGLLRYENDIALNEEVVLMTTKGEAIALGIAQMTTVELATCDHGVVAKVKRCIMERDTYP
RRWGLGPKAMEKKKMIKEGKLGKHGEKIEGVTPAEWSKDYVDYTRDDPAAGPSTLAPAPV
PAAVPTTTTDEKPAEVTEEKKKEKKEKKEKKEEKKRKRKSEGVPDADGDISMAVSTGGDE
ERKETEEERAERKRKKKAAKEAAKAAAANGDDGETKERKRKKTEE
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaggagctcactcgcggccaagttgcgtcggctcagcttgatggggactactcc
atcaagtcagaagagtctactccgaaactcgacacgtctcaatggccattactcctaaag
aactatgacaaacttctggttcgctccagtcacttcacgcctattcctcatggctgcagt
ccattgaaacgggatatacaatcatatatcaagtcaggcgtcatcaacttggataagccg
tctaacccatcgtcacatgaagtggtcgcatggctcagacggattttgagagttgagaaa
acgggtcatagtggtactctggacccaaaagtaacaggctgcttaattgtgtgtattgac
cgtgctacgaggctggtaaagtctcagcaaggagctggaaaggaatatgtttgcgtttta
cggctccatgctggcttggaaaatccttcagctctacctcgagctttgcaaacgctcaca
ggtgcactattccaacgtcctcctcttatttcagctgtcaaacgacaactccgtgttcga
acgatatatgagtcgaagcttcttgagtttgatgaaaagagaaatctagcggtattctgg
gttagttgtgaggctgggacgtacatccggacattatgtgtacatctcgggctattactg
ggtgtcgggggacacatgcaggagctacggcgtgtacgaagtggtgccatgagtgaaaac
gacgacattgttaccatgcacgatgttatggatgcacaatggatgtacgacaatactcga
gacgagtcgtatcttcgtcgagtcatccgcccgttggaatgccttttggttggctacaag
cgtatagtcgtgaaagatagtgccgtgaatgctgtttgctatggtgccaagctcatgata
cctggtctgctacgatacgagaatgacatcgctctcaatgaagaagttgttctcatgacc
accaagggcgaggccattgcattaggaattgcgcaaatgacgacagttgaactcgcgact
tgcgatcatggtgtggtcgcaaaagtgaagaggtgtatcatggaacgagacacgtaccct
cgacgatggggtttgggaccaaaggcaatggaaaagaagaaaatgattaaggaagggaaa
ctaggcaagcatggagagaagattgaaggtgtgacacccgcggaatggagtaaagactat
gttgactacacgcgagacgatccggctgctggaccttcaacacttgctccggcaccagtg
cctgccgccgtacctacgacaacaactgacgagaaaccggccgaagtgactgaggagaag
aaaaaggagaagaaagaaaagaaagagaaaaaggaggagaaaaaacgtaaacggaagtca
gaaggggtaccggatgcagatggggatatttccatggcagtcagtactggtggtgatgaa
gagcgaaaagaaacggaggaggagcgggcggaaaggaaacggaagaagaaagctgctaag
gaagctgccaaggcggctgccgcgaacggtgatgatggagaaacgaaagagcgcaagcgt
aaaaagactgaggagtag
DBGET
integrated database retrieval system
