Fomitiporia mediterranea: FOMMEDRAFT_18146
Help
Entry
FOMMEDRAFT_18146 CDS
T03132
Name
(RefSeq) histone deacetylase clr3
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
fme
Fomitiporia mediterranea
Brite
KEGG Orthology (KO) [BR:
fme00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
fme01009
]
FOMMEDRAFT_18146
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fme03019
]
FOMMEDRAFT_18146
04131 Membrane trafficking [BR:
fme04131
]
FOMMEDRAFT_18146
03036 Chromosome and associated proteins [BR:
fme03036
]
FOMMEDRAFT_18146
Enzymes [BR:
fme01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
FOMMEDRAFT_18146
Protein phosphatases and associated proteins [BR:
fme01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
FOMMEDRAFT_18146
Messenger RNA biogenesis [BR:
fme03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
FOMMEDRAFT_18146
Membrane trafficking [BR:
fme04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
FOMMEDRAFT_18146
Chromosome and associated proteins [BR:
fme03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
FOMMEDRAFT_18146
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Hist_deacetyl
Arb2
DUF1749
Motif
Other DBs
NCBI-GeneID:
18677506
NCBI-ProteinID:
XP_007264065
JGI:
Fomme1_18146
LinkDB
All DBs
Position
Unknown
AA seq
733 aa
AA seq
DB search
MSFLTAMVSGLMRGGSQASAPSAATGTSDARIEEVVTQTENVTLEETAEESRSMDIDGVT
PNEEPVHVLDETHESSSAPTGSAVTARTEMAAAQTLVRPSSVPLEREAAQMPRFGYVYDV
RMMNHAPVTSSNHEDHPEQPARIAGIYMRLRNFGCLLRMKHIPIRPVRKMEAMLVHSEDH
WEKVQMIARMDSEQIAMSEAYYEFLSLYVCPSTTMAAQLSCGGVIEAALAVARGELEKSF
AIVRPPGHHAEPEEHMGFCFFNNVAVAARVVQQLTPLKRILILDWDVHQGNGTQRAFNDD
PSVLYISIHRYENGIFYPGGPFGGLDSCGEGAGEGTSVNIPWPEAGMGDAEYIHAFTRIV
IPIAMQFAPELVIISAGFDAADGDDLGECHVTPAGYAMMTHMLSSLAGGKLVVALEGGYN
VESISNSALAVTRVLLGDAPPELKPVVANEAATETVWLVAKRQHRYWQNLDVTSCEPREE
YPEQTLSIPELLKIHRQEYLYREYQMVQVPLLDTEVEERYQSQVICSQDVMDKDTLVLLV
HQFGNLLVEVAGAMVCDVQLEHSYLLDVTKRLVEWVRQKGYAYAEINTYPRPPQPNHRRS
WSELAREVVSYLWDNYILLSQAKKIVLIGHGPECQAVMDLLSTRVQTVMDTVQAVVLIVG
REDIPSIPRHEDELRDWYTKSSFVAAPLDHELNIEGKIRKKHGKVKFYNEKKRVKILSHA
LPDITSFIESKLS
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atgtccttcctcactgcaatggtcagtggtctaatgagaggagggtcgcaagcctctgca
ccctccgcagctactgggacatctgatgcgaggatagaggaagtagtgactcagactgaa
aatgtaactcttgaagagactgcagaagagtccagatctatggacattgacggcgtaaca
cccaacgaagagcccgttcacgtcctagacgaaacgcacgaatcctcctctgcaccaacc
gggtcagcagttactgcgagaacagaaatggcggctgctcaaacgctcgttcgaccgagt
tctgtccctctggaacgagaggctgcgcagatgcctcgtttcggctacgtttatgatgtc
cgtatgatgaaccatgcgcctgtgacctcaagcaatcatgaagaccatccggagcagcct
gctcgaatagccggtatttatatgaggctccgcaatttcggttgtctgttacgcatgaaa
cacattcccatccgtccagttcgtaaaatggaggcaatgctggtccatagcgaagaccac
tgggagaaggtccagatgatagcccgaatggactctgaacaaatcgccatgtcagaggct
tactatgaatttctttcactctatgtctgtccaagtactaccatggctgctcaactcagc
tgcggtggcgtcatcgaagctgcactggctgttgcacgcggtgagctagaaaaatcattc
gctatcgttcgtcctcctggccatcatgcagagccagaagagcacatgggtttttgtttc
tttaacaatgttgccgtggctgcgcgcgtcgtgcaacaactcacgcctttgaaacgtata
ctgatcttagattgggatgtgcatcaaggcaatgggacacagcgcgcctttaacgatgat
cctagcgtgttgtacatatcaattcatcggtatgaaaatggtatattttaccccggtgga
ccttttggcggattagattcctgtggcgaaggagcaggagagggaacgtcagtaaatatt
ccatggccagaagccgggatgggagatgcagagtacattcatgctttcacgaggattgtc
ataccaatagctatgcagtttgctcccgagcttgtcataatttcagcaggctttgacgca
gctgatggagatgatcttggtgaatgccacgtaacaccggcaggttatgcgatgatgacg
cacatgctgtcatcgctcgccggcgggaagctcgtcgttgcgttggagggcggatacaat
gtcgaatccatttcaaactctgcactcgctgtaactcgggtccttttaggtgatgcgcct
ccagagttgaagccggtagtggcgaatgaagcagctaccgagactgtatggctcgtagcc
aaacgacaacataggtattggcagaaccttgacgtaacttcttgtgaacctcgtgaggaa
tacccggagcagacactttcgatacccgaactacttaagatacatcgtcaagaatacctc
tatcgagaataccagatggtgcaagtaccgcttctagacacagaggtagaagagcgctat
cagtctcaagtcatttgctcccaagatgtcatggataaggataccctggtcctacttgta
catcaatttggcaacctactagttgaggtcgccggcgccatggtatgcgatgtgcaactc
gagcactcctatttattggacgttactaaacggcttgtagaatgggtgaggcagaaggga
tacgcttacgcggaaatcaacacgtacccaaggcctccacagcccaaccatagacgaagt
tggtcggagctcgctcgcgaggtcgtatcctacctgtgggacaactacattctgctttca
caggcaaagaaaattgtcttgataggacatggtcctgaatgtcaagctgtcatggacctt
ttgagcactcgtgtacaaactgtaatggatacagtccaagctgttgtgttgatcgttggg
cgagaagacatccctagtatcccgaggcacgaagacgaactcagggactggtacacaaaa
agctccttcgttgctgcccctctggaccacgaactcaacatcgagggaaagatacgcaag
aagcacgggaaagtgaagttttataacgaaaagaaacgagttaaaattttgtcccatgcc
ctcccggacatcacgtcgttcattgagtctaagttgtcgtaa
DBGET
integrated database retrieval system
