Formosa sp. Hel1_33_131: FORMB_19870
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Entry
FORMB_19870 CDS
T04465
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
for
Formosa sp. Hel1_33_131
Pathway
for03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
for00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FORMB_19870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
for03400
]
FORMB_19870
Enzymes [BR:
for01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
FORMB_19870
DNA repair and recombination proteins [BR:
for03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
FORMB_19870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
UB2H
SBP_bac_3
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AOR29016
UniProt:
A0A1D7Y0C0
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All DBs
Position
2059885..2063190
Genome browser
AA seq
1101 aa
AA seq
DB search
MIHQNLSTAISKSKEKTHLKGALGSSLSFTIASVFKTAKHPFLLIFDTKEEAAYYLNDLE
VLLDDKEVLFYPGSYRRPYQIEETDNANVLLRAEVLNRINSQKKPALIVTYPEALFEKVL
SRKELEKSTFKVAVGEELSLDFFNEVLFEYQFKRVDFVTEPGEFSVRGGIVDVFSFSHDE
PYRIEFFGDEVDSVRTFDIESQLSIKPIKKLQIIPNIEHKLLNETRQGFLEYIASNTVVF
TKNIPAFLAATDTLQEKASEAYNELSATLKHSRPEDLFCTSANFKSQLLDFSVVEFGTTA
VLATKKEQQLEVQVSPQPSFNKQFNLIIEDLNTHHDMGYQNYICCSNAQQAQRFYDIFET
VDEDVQCQTIVLSLYQGFIDHDKKMVCYTDHQIFERYHKFHLKNGFSKKQSITLQELTKL
EIGDYITHIDHGIGKFGGLQKIDVEGKKQEAIKLFYGERDILYLSIHALHKITKFNGKDG
KSPKIYKLGSKAWKVLKQKTKSRVKEIAFNLIKLYAKRKLETGFRYNPDTSMQLELEASF
VFEDTPDQITATADIKADMESERPMDRLICGDVGFGKTEVALRAAFKAVDNGKQVAILVP
TTILAFQHAKTFKARLKDFPVRVDYINRFKTTKQRKETLEQLESGSLDIIIGTHQLVNKS
VKFKDLGLLIVDEEQKFGVAVKEKLKTLKDNVDVLTLTATPIPRTLQFSLMAARDLSVIT
TPPPNRFPIDSIVIRLNEEVIRDAIQYEIQRAGQVYFIHNRIENIKEVAGLLQRLVPDAK
IRVGHGQMEGRKLEQLMLDFMSGEFDVLVSTTIVESGLDVPNANTIFINNANNFGLSDLH
QMRGRVGRSNKKAFCYFITPDFHAMTDEARKRISALEQYTALGSGFNIAMKDLEIRGAGD
LLGGEQSGFINDIGFETYQKILNEAIEELKETEFKSLYNEDINTKEFVRDVTIDTDFSLL
FPDDYINNITERLSLYTQLNTLKNEADLQLFERDLIDRFGALPTQVVDLLDSVRIKWLAT
TLGFEKIVMKNHKLVGYFISDQESRFYQSIHFSKVLQYVQAHPETCTVKEKQMRLGLRLL
MSFSKINSVQQGLEALKPILT
NT seq
3306 nt
NT seq
+upstream
nt +downstream
nt
ttgattcatcaaaatctgagcactgccatatccaagtccaaagaaaaaacacatttaaaa
ggcgctttaggctcttcgttgtccttcacaatagccagtgtgtttaaaaccgccaagcac
ccctttttgttaatttttgataccaaggaagaagcggcctattacttgaacgatttggag
gtgttactcgatgacaaagaagtcttgttctatccaggaagctatcgcagaccctatcaa
attgaggagacagacaacgccaatgtgttgttgcgcgctgaggtattgaaccgtatcaat
tctcaaaaaaaaccagcactcattgttacctatcccgaagcgctttttgaaaaagtgttg
tccagaaaagaacttgaaaaatcaacgtttaaggtagcggtgggtgaagaattgagttta
gattttttcaacgaagtcctttttgaataccagtttaaacgcgttgattttgtcacggag
ccaggcgaattctctgtgcggggtgggattgtagatgtgttttcattttcgcatgacgag
ccctaccgaattgaatttttcggcgacgaagtggacagtgttcgaacgtttgatattgaa
tcgcaactctcgataaaaccaattaaaaaacttcaaatcattcccaatatcgagcataaa
ttgctcaatgaaacacgccaagggtttttagaatatattgcttcaaatacggtggtgttt
actaaaaatattcctgcatttttagcagcaacagatacgcttcaagaaaaagcttccgag
gcgtataatgaattgtcggcgacccttaagcacagccgaccggaagatttgttttgcacg
tctgctaatttcaaatcgcagttgttggatttctcggtggttgaatttggaacgaccgct
gttttagcaactaaaaaggaacagcaattggaggttcaagtcagtcctcaaccctcattt
aataaacagtttaatctgattattgaagatttaaatacccatcacgatatggggtatcaa
aattatatttgttgttccaatgcccaacaagcccagcggttttatgatatttttgaaacc
gtagatgaagatgtgcagtgtcaaaccattgtgttgtctttgtaccaaggatttatcgat
cacgataaaaaaatggtctgttataccgatcatcagatttttgaacgttaccataaattt
cacctcaaaaacgggttttccaaaaagcaatccattactcttcaagaattaaccaaactc
gaaatcggggattacatcacccatattgaccatgggattggaaagtttggaggcttgcaa
aaaattgatgtagaaggcaaaaaacaagaagccatcaaactgttttatggcgaacgtgac
atcttatatttaagcattcacgcccttcataaaatcacaaaatttaatgggaaagacgga
aagtctcctaaaatttataagctaggtagtaaggcctggaaagtattgaagcaaaaaacc
aaatcaagggttaaagaaattgctttcaatctgataaaactctatgccaagcgcaagtta
gaaacgggttttagatacaacccagatacttcgatgcagcttgaattggaagcctctttt
gtgtttgaggatacgcccgatcaaattactgccacagccgatatcaaagcggatatggaa
agcgaacgccctatggaccgtttgatttgtggcgatgtagggtttggaaaaaccgaagtt
gctctgagagccgcttttaaagctgttgacaatggaaaacaagttgccattttggtgccg
accaccattctggcgtttcagcatgccaaaacctttaaggcacgtttgaaagattttcct
gtcagagttgattatatcaaccgtttcaaaaccaccaaacaacgcaaagagaccttagaa
cagttagaatctgggagtttggacatcattattggcacgcatcaattggtcaataaatcc
gtgaaatttaaagatttagggttgttaattgtcgatgaggagcaaaaatttggagtggca
gtcaaagaaaaactcaaaacccttaaagacaatgtagatgtgctcacgctcactgcgacc
ccaattcctcgaacgcttcaatttagtttgatggcagcacgggatttatcggttattaca
acgccaccacccaaccgttttccgattgacagtattgttattcgtttgaatgaagaagtt
attcgggatgcgattcaatatgaaattcaacgggcgggacaagtttattttattcacaac
cgtattgagaacattaaagaagtcgctgggcttttacaacgtctggtgcccgatgccaaa
atccgtgtggggcatggtcaaatggaagggcggaagttggaacaactcatgctcgatttt
atgagtggagagtttgatgttttggtcagtaccaccattgtcgaaagtggtttggatgta
cccaatgccaatacgattttcattaacaatgccaataattttggactgagtgatttacac
caaatgcggggccgtgtcggtcgaagtaacaagaaagcgttttgttattttattacaccc
gattttcatgccatgacggatgaggcgcgcaaacgtatttcagctcttgagcaatacact
gctcttggaagtggatttaatattgccatgaaagatttggaaattcgaggcgctggcgat
ttgttgggaggcgagcaaagtggatttatcaatgatattggatttgaaacctatcaaaaa
atactgaatgaagccattgaagaactcaaagaaaccgagttcaagtcgctttataatgaa
gatataaacaccaaggaatttgtaagagatgtcactattgacaccgacttttctttgtta
tttccagatgattacatcaacaatattaccgagcgtttaagtttgtacacccaactaaat
accttgaaaaacgaagctgatttacaactctttgaacgggatttaatcgatcgatttggc
gcacttccaacgcaggtagtagaccttttagacagtgtgcgtatcaagtggttggcaacg
actttaggcttcgagaaaattgtcatgaaaaaccacaaattagtgggctattttatcagt
gatcaagaaagtcgtttttaccaaagcattcatttttcaaaagtattgcaatacgttcaa
gcacatccagaaacctgtactgtgaaagaaaaacaaatgcgtctcgggctgcgtttgttg
atgagtttttctaagatcaattcggtgcaacaagggctagaagccttaaaaccaatcttg
acataa
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