Flavobacterium psychrophilum Z2: AMR72_15345
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Entry
AMR72_15345 CDS
T04556
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
fpsz
Flavobacterium psychrophilum Z2
Pathway
fpsz03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
fpsz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
AMR72_15345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fpsz03400
]
AMR72_15345
Enzymes [BR:
fpsz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
AMR72_15345
DNA repair and recombination proteins [BR:
fpsz03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
AMR72_15345
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
DNA_ligase_C
Motif
Other DBs
NCBI-ProteinID:
ALM50148
LinkDB
All DBs
Position
complement(3490426..3493101)
Genome browser
AA seq
891 aa
AA seq
DB search
MALEKYRQKRDASKTPEPFGGKSNDDKLRFVIQKHAASHLHYDFRLEMEGVLKSWAVPKG
PSADPEVKRLAMMVEDHPYDYRNFEGIIPQGEYGGGTVIVWDEGFYEPFESQATTKKDQD
KELRAGLHSGKIKFVLKGKKLKGAFALIKAHGRGENGWLLMKLEDKYATATDVTKKDKSV
VSGKTLEQVAKTSTNIYGKKPAESEQETLEKKVETTKEKPKALQADALLKKGKRSKLLTE
VKPMLATLVSEPFDTPGWIYEVKWDGYRALAYINKGKSDLLSRNLKSFTEKYYPIAAVMD
SWSINAVLDGEILVIGKDGKANFSALQNWRSEADGDLVYYAFDLLWYEGKDITGLPLSER
QAILKEILPTNDDHVRLSQVFDTNGIDFFEAAQKMGLEGIMAKKADSIYAIDARSKDWLK
IKVNQRQEVVIGGFTRNEGTAKQFSSLLLGVYEKGKFEYVGKVGTGFSDKKQKEMMALFK
PLITDKIPFDTKPDVNKPSRFRPNPPKATATWLKPELVCEVSFIEVTGDGVFRHPSFEGM
RTDKKAKDVVRERAAETKTVTSPAKQDKLVSAPKRGAVKTLLNPKEESQVKKVNGHNLKF
TNLSKVYWPEEGYTKRDMFNYYYQVADYILPHLKDRPLSLNRFPSGIHGKSFYQKDVKGK
APEWATTYPYTTSDGEDKEFLVGDDEATLLWMASLGCIEMNPWFSRIQHPDNPDYCVIDL
DPAEKTTFEQVIQAAREVKKVLDAIDVVSYVKTSGSTGIHIYIPLGGKYSYDQSQMFARL
LVSIVHERLPEFTSLERKIKDRAGKMYLDFLQNRPGATIACAYSLRPKPGATVSMPLHWD
EVKKGLKMKDFTIKNALGRVKSEGDLFKGTLEGGIDMEKALLNAQNVLYKK
NT seq
2676 nt
NT seq
+upstream
nt +downstream
nt
atggctttagaaaaatacagacaaaagcgtgacgcctctaagaccccagagcctttcggc
gggaaaagcaacgatgataaattgcgcttcgtaattcagaaacatgcggcatcccacctg
cattacgattttcgccttgaaatggaaggcgtactcaaaagctgggcggtacccaagggt
ccatcggcggaccctgaagtaaaacgccttgccatgatggtagaggaccatccctacgat
taccgcaatttcgaaggtatcattcctcagggagaatatggcgggggcactgtcatagtc
tgggacgaaggtttttatgagccgtttgaatctcaggccacgacgaaaaaggatcaggat
aaggaactgcgcgccgggctgcacagcggcaagatcaagtttgtattaaaaggtaaaaaa
cttaaaggcgcattcgccttgattaaagcccatgggcggggcgagaacggctggctgctg
atgaagctggaggacaaatatgccactgccactgacgtaacaaaaaaagataagtccgtg
gtatcgggaaagacgctcgaacaggttgccaaaaccagcacgaacatttacggaaagaaa
cctgccgaatcagagcaggaaacattggaaaagaaagttgaaactactaaagaaaagcca
aaggcattacaggccgatgcattgttgaaaaaagggaaaagaagcaaactgcttaccgag
gtaaagcccatgctggccacgctggtgagcgagccttttgataccccagggtggatctat
gaggtaaaatgggacggctaccgcgccctggcctacatcaacaaaggcaagtcagacctt
ttatcccgaaacctcaaatcgtttaccgagaaatactaccccatcgcagcagtcatggat
tcctggagcatcaatgcggtattggatggggaaatactggtaatcggcaaggacggtaaa
gccaacttcagtgccctgcagaattggcgcagcgaagccgatggcgacctggtgtactat
gcctttgaccttttatggtatgaagggaaagacattaccgggctgccgctatcagaacgc
caagcgatactgaaagaaatattgcccacaaatgacgaccatgtgcgcctgagccaggta
tttgacaccaacgggattgacttttttgaagcagcacagaaaatggggcttgaagggatc
atggcaaaaaaagcagacagtatctatgccatcgacgcccgttccaaagactggctaaaa
attaaagtcaaccaacgccaggaagtggtcattggcggctttacccgaaacgaaggcacg
gccaagcagtttagttcgcttttacttggcgtatatgaaaagggtaaatttgagtatgtc
ggtaaagtcggcaccggtttcagcgacaagaaacagaaagaaatgatggcgcttttcaag
ccgcttattactgataaaatcccttttgacaccaaaccggatgtcaacaagccttcaaga
ttcagaccgaacccgcccaaggccaccgctacatggctaaaacctgaactggtgtgcgag
gtaagctttatcgaggtgaccggcgatggggtcttccgacacccttcgtttgaagggatg
cgcacggataaaaaagctaaggatgttgtacgggagagggctgccgaaaccaaaaccgtt
acatcccctgccaaacaggataagcttgtctcagccccaaagcgaggggcggtaaaaacg
ctgctcaacccaaaagaagaatcccaggttaaaaaggtcaatgggcataacctgaaattt
accaacctaagcaaagtgtactggcccgaagaagggtataccaagcgcgatatgttcaac
tactattaccaggttgctgactatatccttccgcatctcaaagatcggcccctgtcgcta
aaccgtttcccgagtggtattcatggaaagagcttttaccagaaggatgtaaagggcaag
gcacccgaatgggcaaccacatatccctataccaccagcgatggggaggataaggaattt
ttagtcggtgatgatgaggccacattactctggatggcatctcttggttgcattgagatg
aatccgtggtttagccgcatacaacacccggataatcccgattattgcgtgattgatctt
gacccggccgaaaaaacaacttttgagcaggtcatacaggcagcccgagaggtaaaaaaa
gtgctggatgctattgatgtggtaagctatgtaaaaacctcaggatcaaccggcatccat
atttatataccattggggggtaaatatagttacgaccagtcacagatgtttgccaggctc
ctggtatcaatagtgcacgagcggcttccggaatttacctcactggagcggaaaataaaa
gaccgcgccggaaaaatgtacctggactttctgcaaaaccgtcccggcgcaacgattgcc
tgtgcctattcgctgcgccccaagccgggtgcaacagtctctatgcccctgcactgggat
gaggtaaaaaaggggttaaagatgaaagactttaccattaaaaatgcactcgggagagtt
aaaagtgaaggggatctgtttaagggaacgcttgagggtggaattgatatggaaaaagca
ttactaaatgcgcagaatgtactctataaaaagtaa
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