Frankia sp. EAN1pec: Franean1_1291
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Entry
Franean1_1291 CDS
T00608
Name
(GenBank) ATP-dependent helicase HrpA
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
fre
Frankia sp. EAN1pec
Brite
KEGG Orthology (KO) [BR:
fre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
fre03019
]
Franean1_1291
Enzymes [BR:
fre01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
Franean1_1291
Messenger RNA biogenesis [BR:
fre03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
Franean1_1291
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
nSTAND3
HA2_N
NACHT
AAA_19
T2SSE
ABC_tran
PhoH
SRP54
AAA_16
Motif
Other DBs
NCBI-ProteinID:
ABW10745
RhizoBase:
Franean1_1291
UniProt:
A8L7U0
LinkDB
All DBs
Position
complement(1557868..1562193)
Genome browser
AA seq
1441 aa
AA seq
DB search
MISPAETPPPAPPPLAELRACLPQLMARDAHRLSRHLDRARRMRDPAARDSSIARLAADV
ETARLRVETRRASVPVIGYPEELPVSQRRDEILAALRDNQVVVIAGETGSGKTTQLPKLC
LELGRGVRGMIGHTQPRRIAARTVAERIAEELGSVIPETGRDRAQAGPNGNGSGGGNGSG
GGGGLVGYQMRFTDRVGPSTLIKLMTDGILLNELTADRLLRQYDTLIIDEAHERSLNIDF
ILGYLHGLLPRRPDLKVVITSATIDPHRFARHFHDAPVIEVSGRTYPVETRYRPLIDTGP
GVDADSEADAYADADADAGTAARSEPRAGGRKGAGGDGRRGNSEARRGAGGDARTGAGAD
TERDQVSAICDAVDELCAEGPGDILVFLSGEREIRDTADALARRDLPMTEIVPLYARLSS
AEQHRVFTPHTGRRIVLATNVAETSLTVPGIRYVIDPGLARISRYSHRTKVQRLPIEPVS
QASANQRAGRCGRTSDGICIRLYSEEDFAGRPAFTDPEILRTNLASVILQMEALGLGEMA
DFPFLDPPESRQVTDGMRLLTELGAFIEDAEPGKRLTPIGRSLAQLPVDPRLARMVLAAG
ELGCLSEVLVIASALAIQDPRERPVEHRAAADERHARFTDPTSDFLSILNLWRHLRTARE
ERSSNQFRRMCRTEFLNYLRIREWQDVHGQLRAIARNLGLEPNDSPADARSVHQALLTGL
LSHLGRYEPEKKDYLGARGARFAIFPGSGLARRRPARPEAGDAGRGAPAEADAEAGGRRG
PGIPTWVVAAELVETSRLWARTVARVEPEWVEPLAEHLLRHTYSEPHWSRKQAAALAYEK
VTLYGIPLVTSRLVQYGRIDPVVSRDLFIRHALVEGDWNTRHAFFHANRELLAGVEELEH
RARRRDILVDDETLFEFYDQRIPADVVSGRHFDTWWKATRRAEPDLLDFSASMLVNDRAG
AIRQQDYPDTWVADGVELALTYQFTPGEAADGVTVRVPLPVLGTLRAEPFTWQVPGLREE
LVTALIRALPKVVRRGFVPAPNYARAVLDRLTPGDRPAPGGPPSEGGGPPADDRPLADAV
AGELHRMSGSALPSGVWAPPRLAELLPPHLRMTFRVVDDGGATLAEGKDLAELRARLRPR
TKAVVTAAAAGVERSGLRAWDVGTLPAVIERSRGGHVVRAHPALVDEGGSVAVRVFDDRE
EADRAMWAGTRRLLLLNVASPVRGIIGRLPNAAKLALSNNPHRDVTDLLDDCVAAAVDTL
LRRAGGAARDEAGFAALLETVRAELADTAWSVVRGTERVLAAAHEISLGVRALGSPALLV
TATDLRAQLDTLIHRGFVTETGAERLPDLERYLTAARRRLDRLPADAARDRQLTLRVRNV
VEAFNELIDEVGPARAGSEPVQAIRWMIEELRVSLFAQALRTPYPVSEERVYRAIDRLRP
G
NT seq
4326 nt
NT seq
+upstream
nt +downstream
nt
gtgatctctcctgctgaaacgccgccgccggcaccgccgccgctggccgagctgcgtgcc
tgcctgccccagctcatggcgcgcgacgcccaccgcctgagccggcacctcgaccgggcc
cgccggatgcgcgacccggcggcgcgcgactcctcgatcgcgcggctggcggcggacgtc
gagaccgcccggctgcgggtggagacgcgccgggccagcgtccctgtgatcggctacccg
gaggagctaccggtcagccagcgccgggacgagatcctggccgccctccgggacaaccag
gtcgtggtgatcgccggcgagaccggttcgggcaagaccacgcagctccccaagctgtgc
ctggagctgggccggggcgtgcgcggcatgatcgggcacacccagccgcggcggatcgcc
gcgcgcaccgtggcggaacggatcgccgaggagctcggcagcgtgatccccgagaccggc
cgtgaccgggcccaggccggcccgaacggcaacggaagcggaggcgggaacggcagcggg
ggcgggggcgggctggtcggctaccagatgcgcttcaccgaccgggtcggcccttccacg
ctgatcaagctgatgacggatggcatcctgctcaacgagctgaccgccgaccggctgctc
cgccagtacgacactctgatcatcgacgaggcgcacgagcgcagcctcaacatcgacttc
attctcggctacctgcacgggctgctcccccgccgcccggacctcaaggtggtcatcacc
tcggcgacgatcgacccgcaccggttcgcccgccacttccacgacgcgccggtgatcgag
gtttccggccgcacctacccggtcgagacccgctaccgccccctgatcgacaccgggccg
ggcgtcgatgccgactccgaggctgacgcatacgccgacgccgacgcggatgccggcacc
gcggcacggagcgaaccacgagccggtggtcgcaagggagccggcggcgacggccgaaga
ggcaacagcgaggcccggcgaggagccggtggcgacgcccgaaccggggcgggcgccgac
accgagcgcgaccaggtctcggcgatctgcgacgcggtggacgagctgtgcgccgagggg
ccgggcgacatcctggtgttcctcagcggggagcgcgagatccgcgacacggccgacgcg
ctggcccgccgcgacctcccgatgaccgagatcgtcccgctctacgcccggctgtcctcg
gccgagcagcaccgggtcttcaccccgcacaccggacgccggatcgtgctggccaccaac
gtcgccgagacgtcgctgaccgtcccgggcatccgctacgtgatcgacccggggctggcg
cgcatctcccggtacagccatcggacgaaggtgcagcgcctgccgatcgagccggtctcg
caggcctcggccaaccagcgggccggccggtgcggccggacgtccgacgggatctgcatc
cggctgtactcggaggaggacttcgccggccggccggccttcaccgatcccgagatcctg
cgcaccaacctggcctcggtgatcctgcagatggaggcgctcggcctcggtgagatggcg
gacttcccgttcctcgacccgccggagtcgcgccaggtcaccgacggcatgcggctgctg
accgagctgggcgccttcatcgaggacgccgagcccggcaaacggctgaccccgatcggg
cgcagcctcgcccagctgccggtggatccccggctggcccggatggtgctcgcggccggc
gagctgggctgcctgtccgaggtgctcgtgatcgcctccgcgctggccatccaggacccg
cgggagcggcccgtcgagcaccgggccgccgccgacgagcggcacgcccggttcaccgat
ccgacgtcggacttcctgtcgatcctgaacctgtggcggcacctgcgcaccgcgcgcgag
gagcggtcgtccaaccagttccggcggatgtgccgcaccgagttcctgaactacctgcgg
atccgggagtggcaggacgtccacggccagctgcgcgcgatcgcccggaacctggggctg
gagcctaacgacagcccggccgacgcccggtcggtgcaccaggcgctgctcaccgggctg
ctctcccacctcggccgctacgagccggagaagaaggactatctcggggcccggggcgcc
cgcttcgcgatcttccccggttccgggctggcgcgacggaggccggcgcggcccgaagcc
ggcgacgcgggccggggcgcaccggcggaagcggacgcggaggccggagggcggcgcggg
ccgggcatcccgacctgggtcgtcgcagccgagctggtcgagacgtcccggctgtgggcg
cggaccgtggcgcgggtggagcccgagtgggtcgagccgctcgccgagcacctgctgcgg
catacctacagcgagccgcactggtcccgcaagcaggccgcggcgctggcctacgagaag
gtcacgctgtacgggatcccgctggtgacgtcgcggctggtccagtacggccggatcgac
ccggtcgtcagccgggacctgttcatccggcacgcgctcgtcgagggcgactggaacacc
cggcacgccttcttccacgcgaaccgggagctgctcgccggggtcgaggagttggagcac
cgggcccgccgccgcgacatcctcgtcgacgacgagacgctgttcgagttctacgaccag
cgcataccagccgacgtcgtctccggccgccatttcgacacctggtggaaggcgacccgc
cgcgccgagccggacctgctcgacttctccgcgtcgatgctggtcaacgaccgcgcgggc
gcgatccgccagcaggactaccccgacacctgggtcgccgacggcgtcgagctggcgctc
acctaccagttcacgcccggggaggccgccgacggggtgaccgtgcgggtgccgctgccg
gtcctcggcacgctgcgcgcggagccgttcacctggcaggtgcccgggctgcgggaggag
ctcgtcaccgcgctgatccgtgcgctgcccaaggtggtgcggcgcggcttcgtcccggcg
ccgaactatgcccgcgctgtcctggaccgcctgacccccggcgaccgcccggcccccggc
ggtcccccgtccgagggcggcggaccgccggccgacgaccgcccgctggccgacgccgtc
gccggtgagctgcaccggatgagcggctcggcgctcccctcgggggtctgggcgccgccg
cggctggccgagctgctgccgccgcacctgcggatgaccttccgggtcgtcgacgacggc
ggggcgacgctcgcggagggcaaggacctggccgagctgcgggcccggctgcggccccgg
acgaaggcggtcgtcacggccgcggccgccggcgtggaacgctcgggcctgcgcgcctgg
gacgtcggcaccttgcccgcggtgatcgagcgcagccgcggcgggcatgtcgtgcgcgcc
cacccggctctggtcgacgagggcggctcggtcgcggtccgggtcttcgacgaccgggag
gaggccgaccgcgcgatgtgggccggcacccgccggctgctgctgctcaacgtcgcctcc
cccgtccgggggatcatcggccggctgccgaacgcggcgaagctggccctgagcaacaac
ccgcaccgcgacgtcaccgacctgctggacgactgcgtcgccgccgccgtggacacgctg
ctgcgccgcgccggcggggccgcccgggacgaggcgggtttcgccgcgctactcgagacg
gtgcgcgcggagctggcggacaccgcgtggtcggtggtccgcggcaccgagcgcgtgctg
gccgccgcccacgagatcagcctcggggtgcgggcgctgggcagcccggcgctgctggtg
accgcgaccgacctgcgtgcccagctcgacacactgatccaccggggcttcgtgaccgag
acgggcgccgagcgcctgcccgatctggagcgctacctcaccgccgcccggcggcgcctg
gaccggctgcccgccgacgccgcccgggaccgccagctcaccctccgggtgcgtaacgtc
gtcgaggccttcaacgagctgatcgacgaggtgggcccggctcgcgccgggtccgaaccg
gtccaggcgatccgctggatgatcgaggagctgcgggtcagcctgttcgcccaggcgctg
cgcacgccgtacccggtctccgaggagcgcgtctaccgggcgatcgaccggctccgcccc
ggctga
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