Frankia sp. EAN1pec: Franean1_5353
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Entry
Franean1_5353 CDS
T00608
Name
(GenBank) RNA polymerase, sigma-24 subunit, ECF subfamily
KO
K03088
RNA polymerase sigma-70 factor, ECF subfamily
Organism
fre
Frankia sp. EAN1pec
Brite
KEGG Orthology (KO) [BR:
fre00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fre03021
]
Franean1_5353
Transcription machinery [BR:
fre03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Franean1_5353
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r4_2
Sigma70_ECF
HTH_23
HTH_28
DUF742
Motif
Other DBs
NCBI-ProteinID:
ABW14711
RhizoBase:
Franean1_5353
UniProt:
A8L382
LinkDB
All DBs
Position
complement(6456611..6457444)
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AA seq
277 aa
AA seq
DB search
MRRRVSREASDAEDEVMARLYRDHHRVLLSFIGKHVDDRHRAEDIAQETLLRAWRNRDSL
RPDGVRSYLFTIARNVITDAWRAERRRPSLGDDGGEVVAAAPAVDDVSQAIEEWVVAEAL
GRISLAHRAVVQELYYEGRSVREAAARLALPEGTVKSRVYYAIRALRDAFEEMTVGSPNP
LPAPRGGRCCARPVRRNRSRREQSLCQRTEWALHLLRRRDGHGDHWSRHAHHETMGNVAG
RRVRQPSWQRPLRTGGRQRRRHDGTSVQLVVDAGNEG
NT seq
834 nt
NT seq
+upstream
nt +downstream
nt
atgcgaagaagggtgtcccgcgaggcgtcggacgcggaggatgaagtgatggcccggctg
taccgggaccaccacagggtgctgttgtcgttcatcggcaaacacgtcgacgaccgccac
cgcgccgaggacatcgcgcaggagacgctgttgcgagcttggcgcaatcgcgactcgctc
cggcccgacggagttcgctcgtacctgttcacgatcgccagaaacgtcatcaccgacgcc
tggcgggccgagcggcgacggccgtcactcggcgacgacggcggcgaggtcgtggcggcc
gcccccgccgtcgacgacgtgagccaggccatcgaggagtgggtggtcgcggaggcgcta
ggtcgtatttcgctcgcgcaccgggctgtcgtccaagagctgtactacgagggaaggtcg
gtacgcgaggcggcagcccgcctggcactgccagagggcaccgtcaagtcccgtgtctac
tatgcgatccgcgcgctgcgtgacgccttcgaggagatgacggtcggttcgccgaacccg
ctcccggcgcctcgcggcggtcgctgctgtgctcgtcctgtgcgccggaatcggtctcgt
cgtgaacagtccctttgccagcgcaccgagtgggccctccacctccttcgtcgccgcgac
gggcacggcgatcactggtcgcgccacgctcatcacgaaaccatggggaatgtcgctggc
cgtcgcgttcgacagccttcctggcagcggccccttcgcactggaggtcgccagcgtcga
cggcatgacggaacgagcgtccagctggtcgtcgacgcaggcaacgaaggctga
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