Pseudofrankia inefficax: FraEuI1c_4744
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Entry
FraEuI1c_4744 CDS
T01354
Name
(GenBank) DNA polymerase LigD, ligase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
fri
Pseudofrankia inefficax
Pathway
fri03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
fri00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FraEuI1c_4744
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fri03400
]
FraEuI1c_4744
Enzymes [BR:
fri01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FraEuI1c_4744
DNA repair and recombination proteins [BR:
fri03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
FraEuI1c_4744
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
Motif
Other DBs
NCBI-ProteinID:
ADP82735
UniProt:
E3IZG5
LinkDB
All DBs
Position
complement(5813875..5815551)
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AA seq
558 aa
AA seq
DB search
MSGDAPRGLDAYRGKRDAARTPEPVPEADPARHPRPDPAAPSDPAASGPAAAVDSQEAGP
VDHTGDDQAGRGDTFVIQEHHARALHWDFRLERDGVLVSWAVPRGLPVDRTANHLARQTE
DHPLEYAEFAGEIPKGEYGGGTVTIWDRGGYELESWTADKIKVTLHGSRVQGRYVLFRAG
GGRTTARQTTARQTTARQTTARQTGARAYGPDDWMVRRLDPPDDPTREPMPTTLAPMRAV
ASRELPAGPDWAYEVKWDGMRVLAFVDGGRVRARSRTGRDVTAAFPELRAVGLALGSTQA
VLDGEIVAFGPDGTPDFGRLAHRMHVADAAAARRLAGRIPVSYLVFDLLFLDGHPTTARS
YDERRALLARLPGLTLSETLAGDGPDVLRASAEAGLEGVIAKRRSAAYLPGRRGSDWVKV
KNTRTQSVVIGGWEPGAGKRADRVGSLLVGVAERPGLGEAPPGAPRFRYAGHVGTGFSDA
TLDLLGRLLAPLRRDEPPFADVPDAHVRAAVWVRPELVAEVAYAHWTADNRLRHPSFKGL
RDDLAPAETVVDGDTEPT
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
gtgagcggggacgccccgcgcgggctcgacgcctaccgcggcaaacgggacgcggcccgc
accccggaaccggtccccgaggccgaccccgcccggcacccgcggcccgaccccgctgcc
ccctccgaccccgccgcctccggtcccgccgccgccgttgactcccaggaagccgggccg
gtcgaccacacgggcgacgaccaggccgggcgcggcgacacgttcgtcatccaggagcac
cacgcccgcgcgttgcactgggacttccggctggagcgggacggcgtgctcgtctcgtgg
gcggtccccaggggcctgccggtcgaccggaccgcgaaccacctggccaggcagacggag
gaccacccgctggagtacgccgagttcgccggcgagatcccgaagggcgagtacggcggc
ggcacggtgacgatctgggaccggggcggctacgagctggagagctggaccgccgacaag
atcaaggtcacgctgcacggcagccgggtccagggccgctacgtgctgttccgggccggc
ggcggccggaccacagcccgccagaccacagcccgccagaccacagcccgccagaccaca
gctcgccagaccggcgcccgtgcctacgggccggacgactggatggtgcggcggctcgac
ccgcccgacgacccgacccgggagccgatgccgaccacgctcgcgccgatgcgggccgtc
gcgagccgtgagctgccggccggtcccgactgggcctacgaggtcaagtgggacggcatg
cgggtgctggcgttcgtcgacggcggacgggtccgggcccgcagccgtaccgggcgcgac
gtgacggccgcgttccccgagctgcgcgccgtcggcctggcgctcgggtcgacccaggcc
gtgctcgacggcgagatcgtcgccttcggcccggacggcacacccgacttcggccggctg
gcccaccggatgcacgtcgccgacgcggccgcggcgcgccggctcgccggccggatcccg
gtcagctacctcgtcttcgacctgctgttcctcgacgggcacccgacgaccgcccggtcc
tacgacgagcggcgggccctgctggccagactgccgggcctgacgctgtccgagacgctg
gcgggcgacggccccgacgtgctgcgggccagcgccgaggccggcctggagggcgtcatc
gcgaagcggcgttcggcggcgtacctgcccggccggcgcggctccgactgggtgaaggtg
aagaacactcgcacgcagtccgtcgtcatcggcggctgggagcccggcgctgggaaacgc
gccgaccgggtcggctccctgctcgtcggcgtcgccgagcgccccggcctgggcgaggcg
ccccccggcgcgcccaggttccggtacgccgggcacgtgggcaccggcttctcggacgcc
accctcgacctgctcggccggctgctggcgccgctgcggcgcgacgagccgcccttcgcc
gacgtgccggacgcgcacgtccgcgccgccgtctgggtccgcccagagctggtcgccgag
gtcgcgtacgcccactggaccgcggacaaccggctgcgccatccgtcgttcaaggggctg
cgcgacgatctcgcccccgccgagacggtcgtcgacggcgacaccgaaccaacctga
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