Flexistipes sinusarabici: Flexsi_0431
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Entry
Flexsi_0431 CDS
T01539
Name
(GenBank) DNA polymerase LigD, polymerase domain protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
fsi
Flexistipes sinusarabici
Brite
KEGG Orthology (KO) [BR:
fsi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Flexsi_0431
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
fsi03400
]
Flexsi_0431
Enzymes [BR:
fsi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Flexsi_0431
DNA repair and recombination proteins [BR:
fsi03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Flexsi_0431
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
SLH
Motif
Other DBs
NCBI-ProteinID:
AEI14119
UniProt:
F8E8Z5
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All DBs
Position
452503..453378
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AA seq
291 aa
AA seq
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MKQKINGRTIEISNPHKVFYPNANITKGEILNYYNRIAEYMLPHIRNRLVVMQRFPEGIG
KEGFYHKQVPDYFPEWLQRKTVTLRKGEKQDIAVVNKKADIIYMAEKGVITFHIWLSQKD
NIEKPDKLIFDLDPPKKGEFSEVKFAAYKLRDLFQDMGLIPYVMTTGSKGVHVVTPIKPE
YDFDIIRQYVRDILTELVKKYPDRFTLEPRKDERQGRVFLDYLRHAFGQTSVAPYSLRPI
EGAPIATLLEWEELPYIENSQKYHMKNIFKRLSQKKDPWKEFKLHRKSLDI
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atgaagcaaaagataaacgggcgaacgatcgaaatttccaacccgcataaagtgttttat
ccaaatgcaaacattaccaaaggggaaattttaaattattacaatcggattgctgaatac
atgctcccgcatatcaggaaccggcttgtggtaatgcaacggtttcccgaagggattggc
aaagaaggtttttatcataaacaggtaccggattatttccccgagtggttgcagcgaaaa
acggttacactgcggaaaggggaaaaacaggacattgctgttgtcaataaaaaggctgat
attatttatatggccgagaagggggtgattacgtttcatatttggctgtcacaaaaggac
aatattgaaaagcctgataaactgatttttgacctggatcctcctaaaaagggtgaattc
agtgaagtgaagtttgctgcttataaattgcgagatttattccaggacatgggtcttatc
ccttatgttatgacgaccggatcaaagggggtgcatgtagttactccgataaaacctgaa
tatgacttcgatattatccgacagtatgttagagatatactcacagagttggtaaaaaaa
tatccggatcgatttacacttgagccccgaaaagatgaaagacaagggcgcgtgtttttg
gattatctgcgtcatgctttcgggcaaacgtccgtggctccatattctcttcgtcctatt
gaaggtgctccgatagccacactgcttgaatgggaggaattgccgtacattgagaattca
cagaagtaccatatgaaaaatattttcaagcgactttcgcaaaagaaagacccctggaaa
gagttcaaacttcatagaaaatcattggatatttga
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