Fusobacterium varium: FV113G1_08080
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Entry
FV113G1_08080 CDS
T05280
Symbol
rpoN
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
fva
Fusobacterium varium
Pathway
fva02020
Two-component system
fva02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
fva00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
FV113G1_08080 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
FV113G1_08080 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
fva03021
]
FV113G1_08080 (rpoN)
Transcription machinery [BR:
fva03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
FV113G1_08080 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
Sigma70_r4
HTH_38
HTH_23
HTH_40
Phage_terminase
HTH_11
HTH_28
HTH_29
MarR
HTH_3
HTH_17
Sigma70_r4_2
HTH_Tnp_ISL3
DUF6042
HTH_AsnC-type
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
BBA50461
LinkDB
All DBs
Position
complement(917011..918249)
Genome browser
AA seq
412 aa
AA seq
DB search
MDFTLKLKQEMKLSLTQEMKISMNILQMSSSNLKDFIEKEALKNPMLEVTYSAPSSKYNS
DEEAPSPFDFIIEEKTLIDFLEEQLGYLKISPKIKSICEYVINNLDDRGYLSISKLEIKK
ALKVSAAQMKEAMDIIYSLEPAGIGAENLKENLKIQLIVKNIIDEKLFSLIDNYLEELGD
RNYSIISDKLNISIEQIEDYLDIIKTLEPIPARGYFVGNKTNYVVPEAKIEIIDEELVVT
LNDEAIPKIKINSSYESTNSLSDKNNMYTAINLIKSIEKRYITLERVLNQLIIKQKPFFF
KGKDFLQTLTLKDIAKELNLHESTISRTVRDKFIETPQGMIAIKSLFILNSECLEIKKTI
EELIKSEDKSSPLSDEKISLYFKNNGCNIARRTIAKYREELGIASTRERKRK
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
ttggattttacattaaaattaaaacaagaaatgaagctttctttaacacaggaaatgaag
atttctatgaatatacttcagatgtcttcatctaatttaaaagattttattgaaaaagaa
gcattaaaaaatccaatgctggaagtgacatattctgccccttcatctaaatataattct
gatgaagaagctccttcaccttttgactttattattgaagaaaaaactttgattgatttt
ttagaagaacagcttggttatttaaaaatttcacctaaaataaaatctatatgtgaatat
gtgataaataatctggatgatagaggatatctttctatttctaaattagaaataaaaaaa
gctttaaaagtttctgcagctcaaatgaaagaagctatggatattatatattctttagaa
ccagctggtattggtgctgaaaatctaaaagaaaatcttaagatacagcttatagtaaaa
aatattattgatgaaaagctcttttctcttatagataactatctggaagaacttggagac
agaaattattccatcataagtgataaattaaatatatccattgagcaaatagaagattat
cttgatataatcaagacattagagcctattcctgctcgtggatactttgtagggaataaa
acaaattatgtagttccagaagctaaaatagaaattattgatgaagaattagtagttaca
ttgaatgatgaagctattcctaaaataaaaataaacagttcatatgaatctacaaattca
ctttctgacaaaaataatatgtatacagctataaatctgattaaaagcattgaaaaaaga
tatattactctggaaagagttctaaatcagcttataataaaacaaaaacctttctttttt
aaaggaaaagattttttacaaactttaacattaaaagatatagccaaagaattaaatctt
catgagtctacaatttccagaacagttagagataaatttatagaaacccctcagggaatg
attgctataaaatctctatttatattaaattcagaatgccttgaaatcaaaaaaactata
gaagaacttatcaaatctgaagataagtcttctcctttgtcagatgaaaaaatatcttta
tattttaagaataatggctgtaatattgcgagaaggactatagctaaatacagagaagaa
cttggaattgcttctaccagagaaagaaaaagaaaataa
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