Fragaria vesca (woodland strawberry): 101296668
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Entry
101296668 CDS
T02666
Name
(RefSeq) histone deacetylase 9
KO
K06067
histone deacetylase 1/2 [EC:
3.5.1.98
]
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve03082
ATP-dependent chromatin remodeling
fve03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
101296668
03083 Polycomb repressive complex
101296668
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
fve03036
]
101296668
Enzymes [BR:
fve01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
101296668
Chromosome and associated proteins [BR:
fve03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class I HDACs
101296668
HDAC complexes
Sin3A-HDAC complex
101296668
BRAF-HDAC complex
101296668
REST complex
101296668
SHIP complex
101296668
MiDAC complex
101296668
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.6)
101296668
Heterochromatin formation proteins
Other heterochromatin formation proteins
101296668
Chromatin remodeling factors
NuRD complex
101296668
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
Motif
Other DBs
NCBI-GeneID:
101296668
NCBI-ProteinID:
XP_004300044
LinkDB
All DBs
Position
LG5:18264750..18272285
Genome browser
AA seq
430 aa
AA seq
DB search
MRSKDRISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVEL
AQFHSADYVEFLHRITPDKQHLFSNELARYNLGEDCPVFDNLFEFCQIYAGGTIDAARRL
NNKLCDIAINWAGGLHHAKKCGASGFCYINDLVLGILELLKHHARVLYIDIDVHHGDGVE
EAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKNGIDDTSFTRLFKT
IISKVIETYQPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNIPLLVTGGGGY
TKENVARCWTVETGVLLDSDLPNEIPENEYIKYFSPEFSLRIPNGHIENLNSKSYLSTIK
MQVLENLRCIQHAPSVQLHEVPPDFYIPDFDEDEQNPDERVHQHTQDKHIQRDDEYYEGD
NDNDHNMEDT
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgcgctcaaaagacagaatctcttacttctatgatggggatgtgggcagcgtctacttc
gggcccaaccatccaatgaagccacaccggctgtgtatgacccatcaccttgtgctctct
tatgatctccacaagaagatggaaatttatcggccccacaaggcgtacccggtggagctt
gcgcagttccattcggccgactatgttgagtttctccaccggattacaccggacaagcag
catttgttctccaatgaattagcaagatataatcttggagaagattgccctgtattcgac
aacttgtttgaattctgtcagatttatgccggcggcacgatagatgctgcacgtaggttg
aacaataagctctgtgacattgctataaattgggctggtggattacaccatgccaaaaag
tgtggcgcatctggattttgttacatcaatgatttggtcttgggtatcttggagcttcta
aaacatcatgctcgggtattatacattgacatagatgtgcatcatggcgatggggtagag
gaagctttttactttactgatagggtaatgactgttagtttccacaagtttggggaccta
ttttttccaggaaccggtgatgttaaggaaataggagaaagggaaggcaagttttatgcc
attaatgtcccactaaagaatggaatagatgatacaagcttcaccagacttttcaagact
attatttccaaggttattgaaacatatcaaccaggtgcaatagttctccaatgtggggca
gattcgcttgctggagaccgcttgggctgcttcaatctctccattgatggtcatgctgaa
tgtgttaggtttgtgaagaagttcaatatacccttactggtcacaggaggtggtggatac
acaaaagagaatgtggctcggtgttggactgttgagactggagttctactggattcagat
cttcccaatgagatcccagaaaacgagtatattaagtatttttcaccagagttctcgttg
aggattccaaatggccatatagagaacctaaatagtaaatcatatcttagcacaattaaa
atgcaagtcttggaaaatcttcgttgcatccaacatgctcctagtgtacaattgcacgag
gttccaccagatttttatattccagattttgatgaagatgagcagaaccctgatgaacgt
gtgcatcagcatacccaagacaagcacattcagcgtgatgacgaatattatgagggggac
aatgataacgatcacaacatggaagacacataa
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