KEGG   Fragaria vesca (woodland strawberry): 101296668
Entry
101296668         CDS       T02666                                 
Name
(RefSeq) histone deacetylase 9
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
fve  Fragaria vesca (woodland strawberry)
Pathway
fve03082  ATP-dependent chromatin remodeling
fve03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:fve00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    101296668
   03083 Polycomb repressive complex
    101296668
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:fve03036]
    101296668
Enzymes [BR:fve01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     101296668
Chromosome and associated proteins [BR:fve03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     101296668
   HDAC complexes
    Sin3A-HDAC complex
     101296668
    BRAF-HDAC complex
     101296668
    REST complex
     101296668
    SHIP complex
     101296668
    MiDAC complex
     101296668
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     101296668
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    101296668
  Chromatin remodeling factors
   NuRD complex
    101296668
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 101296668
NCBI-ProteinID: XP_004300044
LinkDB
Position
LG5:18264750..18272285
AA seq 430 aa
MRSKDRISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVEL
AQFHSADYVEFLHRITPDKQHLFSNELARYNLGEDCPVFDNLFEFCQIYAGGTIDAARRL
NNKLCDIAINWAGGLHHAKKCGASGFCYINDLVLGILELLKHHARVLYIDIDVHHGDGVE
EAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKNGIDDTSFTRLFKT
IISKVIETYQPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNIPLLVTGGGGY
TKENVARCWTVETGVLLDSDLPNEIPENEYIKYFSPEFSLRIPNGHIENLNSKSYLSTIK
MQVLENLRCIQHAPSVQLHEVPPDFYIPDFDEDEQNPDERVHQHTQDKHIQRDDEYYEGD
NDNDHNMEDT
NT seq 1293 nt   +upstreamnt  +downstreamnt
atgcgctcaaaagacagaatctcttacttctatgatggggatgtgggcagcgtctacttc
gggcccaaccatccaatgaagccacaccggctgtgtatgacccatcaccttgtgctctct
tatgatctccacaagaagatggaaatttatcggccccacaaggcgtacccggtggagctt
gcgcagttccattcggccgactatgttgagtttctccaccggattacaccggacaagcag
catttgttctccaatgaattagcaagatataatcttggagaagattgccctgtattcgac
aacttgtttgaattctgtcagatttatgccggcggcacgatagatgctgcacgtaggttg
aacaataagctctgtgacattgctataaattgggctggtggattacaccatgccaaaaag
tgtggcgcatctggattttgttacatcaatgatttggtcttgggtatcttggagcttcta
aaacatcatgctcgggtattatacattgacatagatgtgcatcatggcgatggggtagag
gaagctttttactttactgatagggtaatgactgttagtttccacaagtttggggaccta
ttttttccaggaaccggtgatgttaaggaaataggagaaagggaaggcaagttttatgcc
attaatgtcccactaaagaatggaatagatgatacaagcttcaccagacttttcaagact
attatttccaaggttattgaaacatatcaaccaggtgcaatagttctccaatgtggggca
gattcgcttgctggagaccgcttgggctgcttcaatctctccattgatggtcatgctgaa
tgtgttaggtttgtgaagaagttcaatatacccttactggtcacaggaggtggtggatac
acaaaagagaatgtggctcggtgttggactgttgagactggagttctactggattcagat
cttcccaatgagatcccagaaaacgagtatattaagtatttttcaccagagttctcgttg
aggattccaaatggccatatagagaacctaaatagtaaatcatatcttagcacaattaaa
atgcaagtcttggaaaatcttcgttgcatccaacatgctcctagtgtacaattgcacgag
gttccaccagatttttatattccagattttgatgaagatgagcagaaccctgatgaacgt
gtgcatcagcatacccaagacaagcacattcagcgtgatgacgaatattatgagggggac
aatgataacgatcacaacatggaagacacataa

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