Fragaria vesca (woodland strawberry): 101298779
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Entry
101298779 CDS
T02666
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 42-like
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
fve
Fragaria vesca (woodland strawberry)
Pathway
fve03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
fve00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101298779
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
fve03041
]
101298779
Enzymes [BR:
fve01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
101298779
Spliceosome [BR:
fve03041
]
Complex A
U2 snRNP components
U2 related factors
101298779
Complex B
101298779
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
101298779
NCBI-ProteinID:
XP_011461789
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All DBs
Position
LG3:complement(26067754..26071935)
Genome browser
AA seq
1113 aa
AA seq
DB search
MEGGKHKSRKEGESKRSHRDRSGQKHREDKDGGDKRDRSSRRSVKEKSYDSEERYDKEKL
RDKDSDRTRSRDDDSKRTRERKREGDKEKRERVREKEKDKERERGEREREVKDKVREKRE
LERVSDRDRERRIRERERHRDADTDDIGDHVRERDRKRHKMDKNEYKEKEREMSSSRVNT
QMDNGDESPRKRSDEDSVKKPTREEELENEQRKLDEEMEKRRRRVQEWQELKRKKEEDDR
DNGERNADEPMSGKTWTLEGESDDEEVHPSGKSETGTNLNGEANLIDKEDGHFMVVYPDN
ETAPIASLNGADNASGDDETDPLDAFMNSMVLPEVEKLDNAADPSIADAKNDKKDDRSNG
EQKRRGLNKSMGRIIPGEDSDSDFGDIENDDNVLEDENDDEFIKRVKKTKAEKLSVVDHS
KIDYEPFRKNFYIEVKEISKMSPEEVGACRKQLELKIHGKDVPKPIKTWHQTGLTSKILE
IIKKLNFEKPMPIQAQALPVIMSGRDCIGVGKTGSGKTLAFVLPMLRHIKDQPPVEAGDG
PIGLIMAPTRELVQQIHSDIKRFAKVLGFGCVPVYGGSGVAQQISELKRGAEIVVCTPGR
MIDVLCTSGGKITNLRRVTFLVMDEADRMFDMGFEPQITRIVQNIRPGRQTVLFSATFPR
QVEVLARKVLDKPVEIQVGGRSVVNKDIMQKVEMRQENERFLRLLELLGEWNEKGKILIF
VQSQDKCDSLFRDLLRHGYPCLSLHGAKDQTDRESTISDFKSDVCNLLIATSIAARGLDV
KDLELVINFHVPNHYEDYVHRVGRTGRAGRKGCAITFISEEDARYAPDLVKALELSEQVV
PDDLKSLADNFMAKVTQGLEQAHGTGYGGSGFKFNEEEDEVRRAAKKAQAKEYGFEDDKS
DSEDEDEGIRKAGGDISQQAALAQIAAITAASKANTASMQTPASAAQLLPNGGGSVSHPG
VLGQALPGTASVFTGTGLPLGSNDGAARAAAIAAAMNLQHNLAKIQADAMPEHYEAELEI
NDFPQNARWKVTHKETWGAISDWTGAAITTRGQYFPPGKVAGPGDRKLYLFIEGPTEQSV
KRAKSELKRVLEDISNHAFSLPGGAQQGRYQVL
NT seq
3342 nt
NT seq
+upstream
nt +downstream
nt
atggaagggggcaaacataagtcgaggaaggagggagaatccaagaggagtcaccgggat
cgcagtgggcagaaacacagggaggataaagatggaggagataagagggaccgtagtagc
cgacgttctgtgaaagaaaagagttatgattctgaggaaaggtatgataaagagaagctt
cgagacaaggacagtgataggacgcgcagccgagatgatgatagcaagagaaccagagag
aggaagagggagggggacaaggagaagagggagagggttcgagagaaggaaaaagacaag
gagagggagagaggagaacgggaaagagaggtgaaagataaggtgagagagaagagggag
cttgagagggtaagcgatagagatcgagagaggaggataagagagagggagagacatagg
gatgcagataccgatgatattggtgatcatgttagggagcgtgataggaagcggcataaa
atggataaaaatgagtacaaggagaaagagcgggaaatgagtagtagtagggtaaacaca
cagatggataatggagatgagagcccgcgaaagagaagtgatgaggattcagttaagaag
ccaacccgtgaggaggagttagagaatgaacaaaggaaattagatgaggagatggaaaaa
cggaggagaagagttcaggagtggcaagagttaaagagaaagaaggaagaagatgacaga
gataatggggaaaggaatgctgatgaacctatgtcgggaaagacctggactcttgaagga
gaatctgatgacgaagaagttcatccctcagggaaatcagagacaggtacaaacctcaat
ggagaagccaatcttattgataaagaagatggacatttcatggtagtatatcctgacaat
gaaacagctccaattgcttcactgaatggagctgataatgctagcggggatgacgagact
gatccattagatgcttttatgaattctatggtattgcctgaagttgaaaagctggacaat
gctgcagacccatcaattgctgatgcaaagaatgataaaaaggatgatcgaagtaatggt
gaacaaaagaggagaggtctcaataaatcaatgggaagaataattcctggggaggattca
gattccgattttggggacattgagaatgatgacaatgttctagaagatgaaaatgatgac
gagttcatcaaaagggtaaagaagacaaaagctgagaaactctctgtagttgaccactct
aagatagattatgaacctttccgtaaaaacttctatattgaggtgaaggagatctcaaaa
atgagtccagaagaggttggtgcatgccggaaacaattggaattgaagatacatggtaag
gatgtgccaaagccgattaagacctggcatcaaactggacttaccagtaaaattttggaa
ataataaagaaactgaacttcgaaaagcccatgccaattcaggctcaggcattacctgta
attatgagtggtagagactgcatcggtgttgggaaaactggatcagggaaaacccttgca
tttgttctgccaatgctcaggcatataaaggatcagccaccagtagaagctggagatggg
cctattgggcttataatggcaccaacgagggagcttgttcagcagattcacagcgatatc
aaaaggtttgccaaggtattaggtttcgggtgtgtccctgtatatggaggttctggtgtt
gctcaacagattagtgaattaaagcggggtgctgaaattgttgtatgtacccctggtagg
atgattgacgtactttgcacaagtggagggaaaataacaaatctgcgtagagtaacgttt
ttggtcatggatgaagctgatcgaatgtttgacatgggttttgaacctcaaatcactcga
atcgttcaaaatatccggccaggtcgtcaaactgttttgttttcagccactttccctcgc
caggttgaagtcttggctcgtaaagtgttggacaaacctgtggaaattcaggttggtggg
cggagtgttgtgaataaggacataatgcaaaaggttgaaatgaggcaggaaaatgaaaga
ttcttgagattgttagagctgcttggtgaatggaatgagaaaggaaagattttgatattt
gtccagtcccaggacaaatgtgattctttgtttcgggatctgcttaggcatggatatcct
tgtctctcacttcatggggccaaagatcaaacagatcgtgagtccacgatatctgatttt
aagagtgatgtttgtaatttgttgattgcaacaagtattgctgccagaggattagatgtc
aaggatcttgaactggtgatcaactttcatgtcccaaatcattatgaggactatgtacac
cgtgttggacgtacaggccgagctggccgaaaaggatgtgctataacattcatctctgag
gaagatgctagatatgctccagatcttgttaaagcattggaactttctgagcaagttgtc
ccagatgacctgaaatctcttgctgataatttcatggcaaaagtgactcagggattagag
caagcgcatggaactggttatggaggaagtggatttaaatttaatgaagaggaagatgaa
gttagaagagcggcaaagaaagcgcaggcaaaagaatatggttttgaggatgacaagtct
gattcagaagatgaagatgaaggtattcgaaaggcagggggagacatctcacagcaggct
gcccttgctcagatagcagctattactgctgcttccaaagctaatacagcctcaatgcag
acccctgcttctgctgcccaactgcttcccaacggtggagggtcagtttctcatccaggt
gtccttggtcaagcattaccaggaacagcatcagttttcactgggactggtttgcctctt
ggtagcaatgatggggcagctcgggctgctgcgattgctgcagccatgaacttgcagcat
aacctggcaaagattcaagccgatgcaatgcctgaacattatgaagcagagttagagata
aatgattttccccagaatgctagatggaaggttacccacaaggaaacttggggtgccata
tcagattggactggagcggccatcacgaccaggggtcagtatttcccacctggcaaggtt
gcaggacctggagatcgtaagctctacttgtttatcgagggccctactgaacagtctgtc
aagagagctaaatcggagttaaagcgggttttggaagacatctcaaaccatgcattctca
cttcctggtggagctcagcaaggcagatatcaagttttatga
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integrated database retrieval system
