Gossypium arboreum (tree cotton): 108456702
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Entry
108456702 CDS
T05776
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like isoform X1
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
gab
Gossypium arboreum (tree cotton)
Pathway
gab03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
gab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108456702
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gab03019
]
108456702
Messenger RNA biogenesis [BR:
gab03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108456702
mRNA degradation factors
5'-3' decay
Decapping complex
108456702
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
Motif
Other DBs
NCBI-GeneID:
108456702
NCBI-ProteinID:
XP_017610795
LinkDB
All DBs
Position
11:complement(42893743..42902700)
Genome browser
AA seq
1394 aa
AA seq
DB search
MASSGNPNPQPQIGGGSGGGGGSGGFDLNKLFKPSASPMLQHQHLQDMNVMVTPPSPNTT
NLTTSPSFPAQLSTPPPPPYLTPSSSYPPPTGPYPFHHQYLHYPSPPQHQHPLHPHPNPS
GPIPYHLQPQLPTTPTSGNDILMAFFGTQSQSQAPAPVPSAPPLNMNVNPSAPSPSPSSS
PSPARLLSSKAPKGRHLFGTNLLYDIHVRLPSEVQPQLEVTPITKYASDPGLVLGRQIAV
NRNYICYGLKLGNIRILNINTALRSLLRGHTQRVTDMAFFAEDVHLLASASVDGRVFAWR
INEGPDDEDKQQILGKVVIAIQIMGQEELKHPRVCWHPHKQEILMVAIGNRILKIDTMKV
GKLEGFTAEEPLNCSVDKLIDGVQSVGKHDGEVTELSMCQWLTTRLASASVDGTVKIWED
RKPLPLAVLRPHDGHPVYSATFLTAPHRPDHIVLITGGPLNREVKIWASSGEEGWLLPSD
GELWQCTQTLELRCSAESEVDNAFFNQVVALPHAGLFLLANAKKNAIYAVHIDYGPNPAA
TCMDYIAEFTVTMPILSLTATSDSLPGGDYTVQVYCVQTQAIQQYALDLSQCLPPPLENA
DLDKTDSNAAHVFDAMNSDVSASLELSHGYKPSPSISVLCISPSSSESAAVVSCMQNLAS
SDVNFISESAVSGIESKPSALLSSSSAENMHSASLTGLSQKSSGFRNPSADHVNHSAHDS
VDHKVDTVKENKAEMPYSGGHLQKGEDITQNDISTVPGPHTVFKHPTHLVTPSEILSTMA
SSTENAQISQVINDSEATVEDVVENDAESIEVEVDNLGETRLCQTNETKCSQGPHTTVTD
NKEKAFYSQASDLGIQMARDFCAKSYGVEGAQQANLMGVSVQEDKLTNTGDGDDQNVIKD
VPPKVSETDTAVIVSASPASAKGKKQQKKNSQVSIASSPSESAYNSTDTSNEPGCSSKAL
SADAFLPQLLAMQDLLEKSLSMQKEMQKQMNTIVSAPVNKEGKRLEASLGRSIEKAVKAN
TDALWARFQDENAKQEKLERDRMQQITNLITNCLNKDLPAMFEKSLKKEIAAVGPVVARA
ISPILEKSISSAITESFQKGVGERAVNHLEKSVSSKLEVTMARQIQAQFQTSGKQALQDA
LRSSLETSVIPAFEMSCKSMFEQIDVTFQKGLMEHTATAQQQFENSHSSLALALKDAINS
ASSITQSLSGEIANAQQKLLAIAAAGGSSKAGNPLVTQLSNGPLAHLHEMQPEAQLDPTK
ELSRMIAEKKYDEAFTSALHRSDVSIVSWLCSQVDLQGILSMKPCSLSQGVLLALFQQLA
CDINRETSRKLAWMTDVAVAIIPSDPTIAVHVVPIFRQVSQIVDHLQSMSTTSASESASI
RVLKFVINSVLSGK
NT seq
4185 nt
NT seq
+upstream
nt +downstream
nt
atggcttcctctgggaatcccaatcctcaaccacaaattggcggtggaagtggaggcgga
ggcggcagtggagggttcgatttgaacaaactgtttaagcccagtgccagcccaatgctg
cagcatcagcatctccaagacatgaacgtcatggtaactcctccaagtcctaacactacc
aacctgactacatccccatctttcccagcccaactgtcaacgccgcctccacctccctat
ttaacgccttcctcctcttaccctcctcctactgggccttaccctttccatcaccagtac
cttcactacccttctcctcctcaacaccaacaccccttgcatcctcatcctaatccttct
ggacctattccttatcatctccaaccccaactacccaccactcctacttctggaaatgac
attttgatggccttttttggcactcagtctcagtcacaagctcctgctcctgtcccttct
gccccacctcttaatatgaatgtcaacccatctgccccttcgccctctccctcctcctct
ccctcacctgcccgactgttgagcagcaaggcccccaagggaaggcatctttttgggacc
aatctcctttacgatattcatgtcaggctgcccagtgaagtacagccccaacttgaggtc
actcccattaccaagtatgcttctgatcctggccttgttcttggtcgtcagattgctgtt
aataggaattacatttgctatggtcttaagcttgggaatatccgtatcctcaacatcaac
accgccctccggtccttgcttcgtggccacactcagagagtgacagatatggcctttttt
gctgaggatgtccaccttttggccagtgcaagtgttgatggccgggtttttgcatggagg
atcaatgaaggccctgatgatgaagataagcagcaaattttaggcaaagttgttattgcc
attcagatcatggggcaagaagaactgaaacatccacgagtctgttggcatcctcacaaa
caagagattttgatggttgctattggaaatcgtatcctgaaaattgatacaatgaaagtt
ggaaaacttgaagggtttacagcagaggaacctcttaattgctctgttgataagcttatt
gatggggttcagtcagttggtaaacatgatggtgaggttacagagttgtcaatgtgccaa
tggttgactacccgtttagcttcagcttcagtagatggcacggtgaaaatttgggaagat
cgtaagcccttaccacttgcagtgttgaggccacatgatggacatcctgtttactcagca
acattcttgactgccccgcatcgccctgaccatatagttcttatcacaggaggcccacta
aaccgtgaagtgaagatatgggcctcttcaggtgaagagggctggttgttacccagtgat
ggtgaattatggcagtgtacccaaacattggaattgaggtgttctgctgagtctgaggtt
gacaatgcattctttaatcaagttgtggcactgccccatgcaggcctgtttctgcttgca
aatgccaagaagaatgccatatatgctgtgcacatagactatgggcctaatccagctgca
acttgcatggattatatagctgaattcactgtcacaatgcccatattgagtctcactgca
acaagtgatagtttgccaggtggagactatactgtccaagtctactgtgttcaaacacag
gccattcagcaatatgctttggacttgtctcaatgcctgccaccacccctggaaaatgca
gacttggataaaactgattctaatgctgctcatgtttttgatgccatgaactctgatgtt
tctgcttctctggaattatctcatggatataaaccaagcccttcaatttcagtgttgtgt
ataagccccagtagctctgaaagtgcagcagtcgtgagctgtatgcaaaatttagcttct
tcagatgttaatttcatatctgagagtgctgtgtctggcattgaaagtaagccaagtgct
ttgctgtcttctagtagtgccgaaaatatgcacagtgcatctcttacagggttatcacaa
aagtcttctggttttagaaatccaagtgctgatcatgttaaccactcagcacatgattct
gttgaccacaaggtagatacagtcaaagagaataaggctgaaatgccctactctggtggt
cacctgcagaaaggtgaagatattacccaaaatgacatttcaactgttcctggtcctcat
acagtgttcaaacatccaacccatctggtaacaccatcagagatactgtctaccatggct
tcatcgacagagaatgctcagattagtcaggttattaatgacagtgaggcaacagttgaa
gatgttgtcgagaatgatgctgaaagcatagaggtagaagttgacaatcttggtgagaca
aggctttgtcaaactaatgaaactaaatgttcacaaggccctcatactactgttacagat
aacaaagaaaaggcattctactctcaggcatcggatcttggcattcagatggccagagat
ttttgtgccaaaagttatggcgttgagggagctcaacaagctaatctcatgggtgtttca
gttcaagaagataaacttactaatactggtgatggggatgaccagaatgtgattaaagat
gtccctccaaaggtcagtgaaactgacactgctgtcattgtttctgcatctccagcttct
gctaaagggaaaaagcagcaaaagaaaaattctcaagtatctatcgcatcttccccttca
gaaagcgcatataattccacagatacgtctaatgaaccagggtgtagttccaaggctctg
tcagctgatgcttttttgccccaattgctagccatgcaggacttgcttgagaagtccctt
agcatgcagaaggaaatgcagaagcagatgaacacaattgtctctgctcctgttaacaaa
gaagggaaaagattggaagcatccttgggtaggagcattgagaaagctgtaaaggcaaat
acagatgctttgtgggcccgtttccaggatgaaaatgcaaagcaagagaagttagaaaga
gaccgcatgcagcagataacaaacttgatcaccaactgtttaaataaggacttgccagcc
atgtttgaaaaatccttaaagaaggaaatagctgcagttggccctgttgtggctcgtgct
attagtcctattctggagaaaagtatatcttctgctattacagagtcattccagaaagga
gttggagagagggcagtgaatcatttagagaagtcagtcagttcaaaacttgaggtgaca
atggccaggcaaattcaagcacaatttcaaacttctggaaagcaagcacttcaggatgca
ctaaggtctagcttggaaacttctgttattccagcatttgagatgtcatgcaaatctatg
ttcgagcaaattgatgtcacatttcagaaagggctaatggaacacacagctactgctcag
cagcaatttgaaaattcacattcttcccttgcccttgctttaaaggatgctattaattct
gcaagttcaatcacacaaagcttaagtggagaaatagccaatgcacaacaaaaacttcta
gctatagcagcagcaggtggcagctccaaggcaggaaatcccttggtgacacaattgagt
aatgggccattggctcatctgcatgagatgcagcctgaggcacagttagatccaacaaaa
gagttgtcaagaatgatagctgagaagaaatatgatgaagcattcacctctgccttgcat
agaagtgatgtctcaatagtttcctggttgtgttctcaggttgatctacaagggatattg
tcaatgaaaccatgttcactgagccaaggagtattgctggcactttttcagcaactggct
tgtgatatcaacagggaaacaagtagaaagctggcatggatgactgatgtagcagttgcc
ataatcccatcagatccaacaattgcagtgcatgtggtaccaatctttaggcaggtgtct
cagatagtggatcatctacaaagcatgtccactacatctgcctcagaatccgccagcatc
agggttcttaagtttgtcataaacagtgtgttaagcggtaaatga
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