Gymnodraco acuticeps: 117552062
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Entry
117552062 CDS
T09661
Symbol
col27a1b
Name
(RefSeq) collagen alpha-1(XXVII) chain B isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
gacu
Gymnodraco acuticeps
Pathway
gacu04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gacu00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
117552062 (col27a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
gacu00536
]
117552062 (col27a1b)
Glycosaminoglycan binding proteins [BR:
gacu00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117552062 (col27a1b)
BRITE hierarchy
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
117552062
NCBI-ProteinID:
XP_034081156
UniProt:
A0A6P8UW78
LinkDB
All DBs
Position
Unknown
AA seq
1701 aa
AA seq
DB search
MEPDNAPYSKLKCTGVGGRFLVLWTILCCTCSLKLAHAQDVDVLQQLGLSGRRSGVSSSS
GARSIPNGIIPFKSGVILTPRARIQVPLRTVIPASYSSTNLSLILSLSVHRVNSAFLFSV
LSKKRKVQLGLQFVPGKVLVHVGPRSSVSFDYDVHDGQWHSLALDIQGQQVFLYTSCGKR
SVQADLRSKKEEALDAEGSFLLGKMNHNSVPFEGAICQFDIYPSAEAAHNYCDYIKKHCR
EADTYRPVFEPLLPLIFPDPNITVTRITPLSVTEKSKKAPSPTLALTEESTRTKIFGPID
RLLMLNKSSVNQTANTPNPVAVSVSLPPHPGLESPYNFPTQTSSTRLRTSLTPPNPTPTS
RGSAGNKTKQGVTNSQEPPGERMDLPASIRPSEMKPNLHTTAAVRQDSPSNGDLHPIKHK
TTVAPVKSEPKVPSVQDVKPTSLIPVTPAATDGFQTFDLDPTQFSLLAGPPGLKGEPGPP
GLQGLPGMQGKPGKRGPRGPPGPHGKPGLPGPPGVKGHKGDYGLSPGQSPKGLKGEPGVM
GPPGMHGHDGRKGQKGHAGPSGLPAEPGERGDDGSPGAKGYPGRQGLPGPVGTMGPKGVR
GHIGIPGLYGFPGSDGERGIPGVHGKKGKMGRPGFPGDFGERGPPGPDGNPGDLGSPGPC
GVHGLTGDMGPEGIIGFPGPPGLKGVPGNPGEPGLKGDKGDVGLPGEQGEYGFQGDKGIR
GLPGLPGPCGKPGPQGKPGEKGPDGLPGPLGPEGFPGDIGPPGKNSPEGSKGKQGAQGLP
GPRGTPGLHGDEGRVGPTGPSGLEGRPGKQGFPGLTGPDGLKGETGITGEVGKLGERGLP
GFVGPVGETGITGEKGDRGKTGAPGPPGETGPMGHTGIPGEAGPPGLQGIPGPSGSPGSI
GIRGPKGMRGLRGPDGPVGENGSAGVKGIDGPPGRLGLSGVMGKLGEPGEAGANGFPGVQ
GPSGPPGAKGIAGEPGPAGPPGTIGPLGEMGLRGPPGKAGERGLSGEPGEKGAVGLHGNI
GEQGLIGQRGEQGIDGEAGPSGTDGAKGDKGDAGQEGAEGDRGEIGLKGKQGTPGPPGLV
GVRGQEGKPGKIGERGKPGEKGSKGHQGHLGESGPAGEQGEVGFVGQKGARGTIGPVGAP
GRMGQQGETGISGYEGHMGPPGPLGPPGPKGEKGEQGDDSKAEGLPGPQGDRGPHGNRGE
RGEPGDPGHIGQIGVDGKRGAAGAPGLPGHSGPRGLPGLKGSKGDQGQEGKSGARGASGT
KGPPGPEGPDGPRGVEGREGLEGPSGMDGLSGKDGPKAVKGEQGEDGEVGLPGKPGQWGP
TGVTGLPGSQGSFGPKGERGLPGQTGASGKQGSAGGMGLPGKQGEQGPKGQPGDTGQRGF
PGVFGLFGPKGPMGYIGPAGIQGPKGPRGLLGMEGALGPVGIIGPSGHPGPKGDKGSRGE
TGLQGPGGFAGPRGPPGPPGLPSSAHLLRNEALGATFQVIIDSHAALRPESVEMPMLDQG
TEIFKTLQHLSTLIQSLKNPLGTRDNPARICRDLYNCEQRLHDGTYWIDPNLGCAADTIE
VMCNFTAGGQTCLKPFTVSKLETGVGRIQMNFIHLLSTEAVQHITIHCLNTPVWAAGPSL
QPSSRSVSFKAWTGEKIQAGDLLEPLIPRDDCWIKDGRWHQTQFIFQSQDPNLLPIVDVL
NLPTADGGARYHLEVGPVCFL
NT seq
5106 nt
NT seq
+upstream
nt +downstream
nt
atggagccggacaatgccccgtactccaaactcaaatgcactggagtcggggggagattt
ctggttctttggactatactctgttgcacctgctctctaaagctagcacacgcacaagat
gtggatgttctgcagcagctcggtctttctgggcggagatcaggtgtgtcgtcatcctca
ggcgctcgatccattcctaatggcatcatccccttcaagtctggagttatcctcaccccg
agggcacgtatccaggtgcctctgcgcactgttatcccagcttcctacagctccaccaat
ctctcgctgattctcagcctgtctgttcatcgcgtcaacagtgccttcctcttctcagtt
ctgtcgaagaaaaggaaagttcagcttggactgcagttcgtcccggggaaggtcctggta
cacgtggggccgaggagctctgtgagcttcgactatgatgtccacgatggccagtggcac
agcctggctttggatatccaaggccagcaggtgttcttatacacttcttgtggaaagaga
agtgtacaggcagatttgcgttcgaaaaaagaggaggctctagacgcagagggctctttc
ctgctgggcaaaatgaaccacaactcggtgccgtttgaaggcgccatctgtcagtttgac
atttatccctctgctgaggcagctcataactattgtgattacattaagaaacattgcaga
gaagccgacacatatcggcccgtgtttgaacccctcctacctctcattttcccggatcca
aatattactgtcactcgtataactcctctgtcagtgacggagaaatccaaaaaagctccg
agtcctactttggccttgaccgaggaaagcaccaggactaagatctttggtccaatagac
cgcttgctgatgctgaacaaatcatctgtgaatcagactgcaaacacacctaaccctgtc
gccgtgtctgtatctctgccgcctcatccggggttggaaagtccgtataattttccgact
caaacctcttcaacacgtcttaggaccagtttgacaccaccaaacccaacaccaacctcc
cgtggcagtgccggaaataaaacaaagcaaggggttactaattctcaggaacctcctgga
gaaagaatggatttacctgcctccatccgaccatcggagatgaagccaaacctccacacc
acagctgctgtcaggcaggattctccgtcaaatggcgaccttcatccgataaagcataag
acaaccgtagctccagtgaaatctgagccaaaagtgcccagtgtgcaggatgtcaaaccc
acctcacttattccagtcactccagctgcaacagatggcttccaaacatttgacctggac
ccgacccaattctcgctgctggctggaccacctggactgaagggggaaccaggaccaccg
ggccttcaaggacttccagggatgcaaggaaagccagggaagagaggcccaaggggtcct
cccggccctcatggaaagcctggtcttcctggacctcccggagtgaagggacacaaagga
gattatggactgtcacctggtcaatccccaaaaggactgaaaggagagcctggtgtcatg
gggccccctggaatgcatggccatgatggacgaaagggacaaaaaggtcatgccggtcct
tctggtcttccagctgagcctggtgaacggggagatgatggaagccctggggccaaaggc
tatcctggcaggcagggtttacccgggcctgtaggaacaatggggccaaaaggagtcagg
ggtcacattggcatccctggactctatggctttcctggttctgatggcgagagaggaatt
cctggcgttcatgggaagaagggcaagatgggtaggccggggtttcctggtgactttgga
gagaggggacctcctggccctgatgggaacccaggtgacctggggtctcctggcccatgt
ggagtccatggtctcactggagacatgggcccagagggcattatcggctttccaggacca
ccaggactgaagggagtgcctggaaacccaggggaaccaggactgaaaggtgataagggg
gatgttggcttaccgggggagcaaggggagtacggattccaaggggacaagggtattcgt
ggcttgcccggtttgccaggtccttgtgggaaacctggtccgcagggcaagcctggtgaa
aagggcccggatggtttacctggccctcttggcccagagggtttcccaggtgacattggc
ccaccaggaaaaaacagccctgaaggatccaagggaaaacaaggggcacaaggtttgcca
ggtccaagaggaacacctggacttcatggcgatgagggaagagttgggcccactggaccc
tctggactcgagggcaggccggggaagcagggattcccaggactgacaggcccagatgga
ctcaagggcgagaccgggataactggcgaggttggaaagcttggcgagaggggattgcct
ggttttgtcgggcctgttggagagactggcatcacaggagaaaagggggatcgaggcaaa
acaggagctcccgggcctccaggtgaaacggggccgatgggtcacaccggtatacctgga
gaggcggggccacctggactgcaagggatcccagggccttctggttcaccaggatccatc
ggcatcagaggacccaaaggcatgaggggtctgcggggtcctgatggcccagtgggggag
aatgggtccgctggagtgaagggcatcgatggtccaccaggaagattgggcctctctggg
gtgatgggaaagcttggcgagccaggtgaagccggggctaatggatttccaggtgttcaa
ggaccctcgggtcctccaggggccaaaggaattgcaggagagccaggaccggctgggcca
ccaggaacgatcgggccactgggggagatggggctgagggggccgccggggaaggctgga
gagagagggctgtctggtgaacccggagagaagggagccgtcggtctccacggcaacatc
ggggagcagggtttgattggccagagaggtgagcaaggtattgacggggaggctggacca
agtggaaccgatggagccaagggagataaaggggatgctggtcaagaaggcgctgaagga
gacaggggtgaaatcggtctgaaaggaaagcaaggaacccctgggcctcccggattggtc
ggtgtaaggggtcaggagggtaaaccgggcaaaattggtgaaagaggaaagccaggagaa
aaggggagcaagggtcaccaaggtcatctgggggagagtggcccagcgggcgagcaggga
gaggtgggctttgtcggacagaagggagcgagaggaaccatcgggccagtgggtgctccg
gggagaatgggccaacaaggagaaaccggcatatctggttacgagggtcacatgggaccg
ccaggccccctgggacctcctggaccaaaaggtgaaaagggtgaacagggagacgacagc
aaggcagagggtcttccaggtccccaaggtgacagaggtcctcatggaaacagaggagag
agaggagagccaggggaccccgggcacattggtcaaattggtgttgatggaaagagaggt
gcagctggtgccccagggcttcctggacattctgggccaagaggactgccagggctgaaa
ggatccaaaggtgaccaaggtcaggaaggaaaatcaggagccagaggagcatctgggacc
aaaggaccacccggtccagagggtcctgatggcccacggggagttgagggcagggaagga
cttgagggcccgtctggcatggatggactttctggtaaagatggacctaaagcagtcaag
ggggagcaaggagaagatggagaagtgggcttacctgggaaacctgggcagtgggggcca
actggtgtgacggggcttcctggaagtcaaggctcctttggaccaaagggtgagaggggt
cttccgggccaaactggtgcatcaggaaaacaaggctctgccggcgggatggggctgcca
ggaaaacaaggagagcagggacctaaaggacaacctggggatacaggtcaacgaggattt
ccaggggtgttcggtctttttggaccaaagggacccatgggctacattggccccgcgggg
atacagggaccaaaaggcccgcgtggtttgttgggtatggagggagctctgggccccgtt
ggcatcattggccccagcggtcatcctggacccaagggtgacaaaggaagtcggggggag
acggggttgcaaggaccagggggatttgctggccctcgtggaccacccggaccaccaggt
cttccaagctctgcccatttacttagaaatgaggctctcggtgccacctttcaagtcatc
atcgattcccatgctgcactgaggccagagagcgtggagatgcccatgttagaccagggt
acagagatcttcaagaccctgcagcacctcagcaccctgatccagagtctgaagaaccct
ctggggacccgggacaacccagcacgcatctgcagagacctgtacaactgtgagcagagg
ctgcacgatggcacttactggatcgaccccaacctgggctgcgctgcggacactatagag
gtgatgtgcaacttcacagctggaggacagacctgcctgaaaccgttcactgtgtccaag
ttggagacaggagtgggtcgtatccagatgaacttcatccacctcttgagcacagaggcg
gtgcagcacatcaccatccactgcctgaacactcctgtgtgggcagcaggaccctcactg
caaccctcctccagatctgtgagcttcaaggcctggacgggggagaagattcaggccggg
gaccttctagagccgctcatacccagggacgactgctggatcaaagatggccgctggcat
cagacccagtttatctttcaaagccaggacccgaacttactccccatcgtggacgtgttg
aacctgccgacagcagatggcggcgctcgctatcacctggaggtcggacccgtgtgcttc
ttatga
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integrated database retrieval system
