Gambusia affinis (western mosquitofish): 122827446
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Entry
122827446 CDS
T07758
Symbol
zc3h13
Name
(RefSeq) zinc finger CCCH domain-containing protein 13 isoform X1
KO
K22909
zinc finger CCCH domain-containing protein 13
Organism
gaf
Gambusia affinis (western mosquitofish)
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
gaf03019
]
122827446 (zc3h13)
Messenger RNA biogenesis [BR:
gaf03019
]
Eukaryotic type
mRNA processing factors
3' end processing
N6-methyltransferase complex
122827446 (zc3h13)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
zf-CCCH_4
zf-CCCH_2
Motif
Other DBs
NCBI-GeneID:
122827446
NCBI-ProteinID:
XP_043966356
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All DBs
Position
LG24:8173117..8188464
Genome browser
AA seq
1789 aa
AA seq
DB search
MSKIRRKVTVENSKTISDSGSSSSATTSSTTNPAAPSRRPSVFERLGPSTGSNAVDSHCR
NWLKTGTCSYGNTCRYTHGTQPRSKGFTFSRTTERPTGDLRERMKNKRQDVDPENLKRDL
DEPTSPTVRQRDPSRGRHREKEDIKITKERTPASEEEPAEWETNREDSDIGDYDYELSLE
MKRQKIQRELMQLEQENLDKREDIVIKKDETPAKTRSTGLPKVSDELLSSKESPVSRKSS
GSPKHKSGVKGAGSGKKEKKLALALAVSETTRPTKASHSKKKGPRTPSPPPPVPLDIPVV
GKKHKGKHKNKEKTEEKQKEGKDRGRDMEKHKEKKEKRRDRSESSHKAKRALTSEEHSGS
MSSPSRDASPPARKKSASPKASHKASSLAFPPQRSPSPLRHQRSSSSSQSGSSAHRLSPS
PRRRRSSSPSYHRSSAVQVTASSPPHSRRSRSPPASHDASSPHRRSNRSSPARHHSRGRE
RSRGDRERTPPIQERRHDHRDESRSKRERDRDDRDYDSEVRDDRETREARERRDARERAR
EATRDSRDNRDGRDLKDSREIKAETRSSRESLERRDREREKDRGREKERSDAYRKEEPPP
DDRAYGRGHGRDDGGRTESKLDRAERNGRGRGRANEASDKGSNRNSRSSQLDSGYDNWES
RSSTVRDRSVERSGNERGSDRTSDRDRYESDRRDHARDSSYDRRGGHGERDHRDNRDRGS
PNRYQRRSEESERDERRTDRAEDRRDDRARDRERERERERDREREREKEKEREREREKER
EKEREAERERVREKEREREREREREREREREEREREREREEREREREERERERERKERER
EREQRERERQREWEERERGREERRDRREDSRDERKMSRKRLRVESSPSPQPLPKRTARDF
SPADSDGYNSGEDKSEPPTGRGQAKLHPQPLLPSPVCLPPSDSGDKHRLLSQVVRPQDRL
SRSPPRSAAASEKAAYWKDEDRRVARDKRDARGCHDELETRVDRGRGGERRGEYLPDATS
DSRGRGRDQRESTPSPPLAATPVGSEDATAQSHEEGKKKTKTQRKAVKKGRKEEDISVGG
ALAPTEPPASVSADVPPPLHSPRKGAKKKGHERKRKRSPGGESDASEEETAVQAVPSKRK
RGPRTPPPSMRPDRHRAAATNTERSPLSKTNNFSDWSDEEESDRGGAVDTQAPPPPAERT
PSEPLRRGVGHRMGRDRGGPPPIAPLLSPDPPMLLQTLTPQPLMSQPLLRKPPPEPARSS
SMGSNQSRAAGRRPRSPSSESAHLDDPQGGRLRRGRLQGSNSRDRDRERERERERERPMV
GDPPGGERKSRIDQLRRGEPSRSTSSDRQDSRSHSSRRSSPDSERQGRSRSRAGSYDSRE
REPFERERKDFRPQQNQQQPPPLHLQQPVQEPVQQPVQPQRDWEPEPRDWPSRGRNTLLM
RPGREPLLRGERDIRERERLLPEGLIQQHERERDRDGRGDRGADRERERVMMDLPPHGDL
RAAARGDARGDMMRSDFEPLLPREAFSSPEPEKSSNSHHPAGDQREPEKTESIDGEDDGK
EDEQSIASVGEEYEPISDDELDEILADSQKKEDQQEEEKITGPLDVIDVDWSSLMPKQKQ
EPRAAGAALLRFTPGAVLLRAGISKRLAGPELLEQVKEVCKSELDDPKDADKLFEHDLGA
LNMAAVNRRVERAGLLSNLGPCCKALCARRDFAIRRQLLKNEKGQTKQYPTTPVVDSELL
QMSIRLFRRTTAGPTSAPERSESGSAPAGEAAETGSSKLSTAQPEVCVS
NT seq
5370 nt
NT seq
+upstream
nt +downstream
nt
atgtccaagatcaggcggaaggtgacagtggagaattcaaaaaccatttcggacagcggg
agcagcagcagcgccacaaccagcagcaccaccaaccccgccgccccctctcgccggccc
agcgtgtttgagagactcggtcccagcacggggagtaatgctgttgatagtcactgcaga
aattggctgaagaccggtacctgcagttacggcaacacttgccgctacacacatggaact
cagccacgaagcaaaggattcaccttcagccggacaaccgagaggcccacaggtgacctg
cgggagaggatgaagaataaaagacaagatgttgacccggaaaacctcaagcgagaccta
gacgagcccacatcccccacagtgagacagagagatccctctagagggcgacacagagag
aaggaggacataaagatcacaaaggagcgcaccccggccagtgaagaagagcctgcagag
tgggaaactaatcgtgaagattctgatatcggcgactacgactacgagttatccctcgag
atgaagcggcagaaaattcagcgagaactgatgcagctggagcaggagaacctggacaag
agagaagatatagtcatcaagaaggacgagacgcccgccaaaaccagaagcacgggtttg
ccgaaggtctctgatgagctgctgagctccaaagagtcgcctgtgtccagaaagtccagc
ggctccccgaaacacaagagtggcgtcaaaggggcggggtctgggaagaaggagaagaag
ttagcactggcattagctgtgtcagaaacaaccagaccaacaaaagcgagccacagcaag
aaaaaaggcccccgcacgccgagtcctcctccccctgtcccgctggacattcctgttgtc
gggaagaagcataaaggcaaacacaaaaacaaggagaagacagaggagaagcagaaggaa
gggaaagatcggggcagagatatggaaaaacacaaagagaagaaggagaaacgcagggat
cgttcagagagttcccacaaggccaagcgtgcgctgacatcagaggagcattcaggcagc
atgtcgtctccctccagagacgcttcacctccagctaggaagaagtcagcttcccccaaa
gcttcccataaagcctcgtctctagccttcccccctcaaaggtctccttccccacttcgc
caccaacgcagctcctcctcctcccagtcgggctcctccgcccatcgcctctccccctcc
cctcggcggcgccgttcctcctccccctcctaccaccggagctccgcggtgcaggtcacc
gcttcttcgcctccccactctcgtcgctcccgatcgcctcccgcctctcacgacgcctcc
tccccacaccggcggtccaacaggtccagccccgcccgccaccactccaggggcagagag
cgaagtcgcggcgaccgagaacgaaccccgcccatccaggagcgcagacatgaccacaga
gatgagagccgcagcaaacgggagagggatcgcgacgatcgcgactacgactccgaagtt
cgagatgatcgggagaccagagaggcccgcgagcgacgtgacgctcgtgagcgagcgaga
gaagcaacgcgagattcccgtgacaaccgagacggcagggatttgaaggactccagagaa
atcaaggcggagactcgctccagccgggagtcgctggaacgccgcgaccgcgaacgagag
aaggaccgtgggagggaaaaggagcggagcgacgcctacaggaaggaggagccgcctccg
gacgacagggcttatgggcgaggtcacggacgggacgatggagggaggacggagagcaag
ttggacagagctgagaggaacggcagaggaagggggcgcgccaacgaagcctctgataaa
ggctccaacagaaactcccgcagctcccaactggacagcggctatgacaactgggagtcg
cggagcagcacggtccgggaccgaagcgtggagcggagcggcaacgagagaggctcggac
aggacttcggatcgggaccgctacgagagcgaccgcagagaccacgctagagactcgtcc
tacgaccggaggggggggcatggagagagggatcaccgggacaaccgagacagaggttct
ccaaacagatatcagaggagatctgaggagtcagagagggacgagcggaggacggaccga
gcggaggacagacgggacgacagggcccgcgacagggagcgagagagagagcgggagaga
gacagggagcgagagagggagaaagagaaggagcgagagagggagagagaaaaggagaga
gagaaagaaagagaggcagagagggagcgggtcagggagaaagagcgagagagggagcga
gaacgggaaagagagagggaaagggagagggaggaacgagagcgagagagggagcgagag
gagagggaaagagagagggaagagcgggagagagagagggaaaggaaagagagggaaaga
gagagagaacagagggagcgggagaggcagcgagagtgggaggagcgagagagagggagg
gaggagaggcgggacaggagagaggacagcagagacgagcggaagatgagtcgtaaaagg
ctccgggtggagagcagccccagcccccagcctttgcccaagcgaacggcgcgggacttc
agcccggcggacagcgacggctacaatagcggcgaggacaaaagtgagcccccgactggc
cgcgggcaggccaagctccacccacagcccctcctccccagccctgtgtgtctgcctcca
tctgacagcggggataagcaccgtctgctgagccaggtggtgaggcctcaggaccgcttg
tcccggtcgccgccacgaagcgctgcggcgagtgaaaaggccgcttactggaaagacgag
gaccgccgggtagccagggacaagcgggacgcgcgcggctgtcacgacgagctggagacg
cgcgtagatcgaggccgaggaggcgagaggcggggggagtacctccctgatgctacgtca
gactcacgcggccgaggccgagaccaaagagaatcaactccatcgcctccactagcagcg
actcccgtcggcagcgaagacgccaccgcccaatcccacgaggaaggcaaaaagaagacg
aagacgcagaggaaggcagtgaaaaaagggcgtaaggaagaggatatttctgtagggggc
gctcttgctcccacagagcctccagctagcgtgtctgcagacgttccgccgcctttacat
tcgccgagaaaaggagccaagaagaagggacatgagaggaagaggaagcggtcgccaggc
ggggagtctgacgcgtcagaggaggagacggccgtccaagcggtgcccagcaagaggaag
agaggcccccggacgccaccgccgtccatgagaccagatcgtcacagagccgccgccaca
aacaccgagcgctccccactttccaaaacaaacaacttcagcgattggtccgatgaggag
gagtcagacagaggaggagcggtggacacacaagctccgccccctcccgctgagaggact
ccctccgaaccgctgaggaggggtgtcggacacaggatgggccgagaccgggggggcccg
ccacccatcgccccgctgctctccccggatcctcccatgctgctgcagactctgacgccg
cagccactcatgtcccagccgttgctgcggaaacctccgccggagccggcgcgcagcagc
agcatgggcagcaatcagagccgggcggcgggacgacgcccgcgctcgccttccagcgag
tctgcccacctggacgaccctcaggggggccgcctgcgccgcggccggctgcagggctcc
aactccagagaccgggaccgagagcgagagcgggagagagagagagaacggccgatggtg
ggcgatcctcctggcggcgagaggaaatccagaattgatcagctgcggagaggagagccc
agccgcagcacctcttcagaccgtcaggattcccgcagtcacagctccaggcgcagctct
ccggactctgagaggcagggcaggtcaaggtcgcgagccggctcctacgacagtcgagaa
cgggagcctttcgagcgagagcgcaaggacttccggccccagcagaaccagcagcagccg
ccgccgctgcacctccagcagcccgtccaggagcccgtccagcagcccgtccagccccag
agagactgggagccggaacccagggactggccgagcaggggtcgcaacaccttgctgatg
cgtcctggccgggagccgctgctaaggggcgagagggacatccgggagcgcgagcggctg
ctcccagagggcctcatccagcagcacgagcgagagcgtgaccgagacggccggggcgat
cgaggtgcagatcgagaacgggagagggtgatgatggacctgccgccacacggcgacctg
agagctgcagcgcgaggagacgcgagaggtgacatgatgagaagcgacttcgagcctctg
ctcccaagagaagccttcagctctccagagccagagaaatccagcaacagtcaccatcca
gctggagatcagcgggagccggagaagaccgaaagcatcgacggagaggatgatggtaaa
gaagatgagcagtccatcgcttctgttggagaggagtatgaacccatcagcgacgatgag
ctggatgaaattctggccgacagccagaaaaaggaggatcagcaggaggaggagaaaatc
acaggtcccctggatgtgatcgacgtggactggtccagcttaatgcccaaacagaagcag
gagccgcgggcggcgggtgcggctctgctccgcttcacgccaggcgccgtcctgctgagg
gccggcatttccaagcgcctcgctggcccagaactcttggaacaagtcaaagaggtgtgc
aagtcggagctggacgaccccaaagacgctgacaagctctttgagcacgacctgggagcg
ttgaacatggctgccgtgaacagacgggtggagagggccggcttactgagcaacctggga
ccatgctgtaaggcgctatgcgctcgcagggactttgccattcgccggcagttgttgaaa
aacgaaaagggtcaaacgaagcagtaccccaccacacctgtggtggacagtgagctgctc
cagatgagcatccgcctcttcagaaggaccacggcgggtccgacctccgccccggagagg
tcagagagcgggtcggctccggcaggtgaggctgctgaaacaggcagcagcaagctgagc
acagctcaaccagaggtttgcgtgtcctga
DBGET
integrated database retrieval system
