Gambusia affinis (western mosquitofish): 122841771
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Entry
122841771 CDS
T07758
Symbol
cacna1fb
Name
(RefSeq) calcium channel, voltage-dependent, L type, alpha 1F subunit
KO
K04853
voltage-dependent calcium channel L type alpha-1F
Organism
gaf
Gambusia affinis (western mosquitofish)
Pathway
gaf04010
MAPK signaling pathway
gaf04020
Calcium signaling pathway
gaf04260
Cardiac muscle contraction
gaf04261
Adrenergic signaling in cardiomyocytes
gaf04270
Vascular smooth muscle contraction
gaf04912
GnRH signaling pathway
Brite
KEGG Orthology (KO) [BR:
gaf00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
122841771 (cacna1fb)
04020 Calcium signaling pathway
122841771 (cacna1fb)
09150 Organismal Systems
09152 Endocrine system
04912 GnRH signaling pathway
122841771 (cacna1fb)
09153 Circulatory system
04260 Cardiac muscle contraction
122841771 (cacna1fb)
04261 Adrenergic signaling in cardiomyocytes
122841771 (cacna1fb)
04270 Vascular smooth muscle contraction
122841771 (cacna1fb)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
gaf04040
]
122841771 (cacna1fb)
Ion channels [BR:
gaf04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
122841771 (cacna1fb)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
CAC1F_C
Ca_chan_IQ
GPHH
PKD_channel
Motif
Other DBs
NCBI-GeneID:
122841771
NCBI-ProteinID:
XP_043991293
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All DBs
Position
LG01:complement(41542199..41569961)
Genome browser
AA seq
2012 aa
AA seq
DB search
MTRTDTLHSTTSSTGTQRRRGQHAKKQVQGSNQVQRAPRALFCLKLNNPIRRAALHIVEW
KPFDIFILLAIFANCVALGVSKPFPEDDSNSTNHDLEQVEYVFLIIFTIETFLKILAYGL
VMHPSSYIRNGWNLLDFVIVIVGLFSVVLETMTHKSSGEQATTHHMPGKPGGLDVKALRA
FRVLRPLRLVSGVPSLQIVLNSIMKAMVPLLHIALLVLFVIIIYAIIGLELFIGRMHRTC
YYIGTGAVQMDWSHLYTPRGPERIMKILSLDNYVEDEPVPCAFAGHGRQCTLNGSECRGR
WDGPNGGITNFDNFFFAMLTVFQCITMEGWTDVLYWMNDAIGFELPWVYFVSLVIFGSFF
VLNLVLGVLSGEFSKEREKAKARGDFQKLREKQQMEEDLCGYMDWITQAEDMDELDEDGN
PRPSLGDLSDKKRKFGWFSHSNDTHASLPASETASENTENIDEEHTNCCQACCASVMKIS
CCRTLRRWNRVCRRNCRTAVKSVTFYWLVLLLVFLNTSLSASEHYNQPDWLTQVQDIANK
VLLSLFTVEMLLKMYSLGLAHYFVAFFNRFDCFVVCGGIIETILVELEIMPPLGIAVLRC
VRLLRIFKVTRHWTALSNLVASLLNSMKSIASLLLLLFLFLIIFALLGMQLFGGKFNFDE
TQTKRSTFDAFPQALLTCFQILTGEDWNVVMYDGIMAYGGPVFPGMIVCVYFVILFICGN
YILLNVFLAIAVDNLAGGDGDDKKKEKKTEAEGEEEAEGEVKVDIDEDTEYEEEEELPEG
EDDGGVQLKMADLAPPKEKVLPIPEGSAFFCLGKTNPIRVACHTLIHHHIFTNLILVFII
LSSCSLAAEDPIRAHSFRNNILGYADYAFTSIFTVEILLKMTVHGAFLHQGSFCRNWFNL
LDLLVVSVSLVSFFLHSSAISVVKILRVLRVLRPLRAINRAKGLKHVVQCVFVAIRTIGN
IMIVTTLLQFMFACIGVQLFKGKFYRCTDEAKSTPEQCKGTFVVYKDGDVSHPMVRERIW
LNSDFNFDNVPMGMMALFTVSTFEGWPALLYKAIDANGENSGPIYNYRVEISIFFIVYII
IIAFFMMNIFVGFVIITFREQGEQEYKNCELDKNQRQCVEYALKAQPLKLYIPKNPVQYK
FWSIINSTGFEYVMFVLILLNTVTLAVQHYEQTKTFSDVMDILNMVFTGLFTIEMLLKLL
ALRLRHYFVDAWNSFDALIVVGSVVDIVVTEFSSGEDSSRVSITFFRLFRVMRLVKLLNK
GEGIRTLLWTFIKSLQALPYVALLIAMIFFIYAVIGMQTFGKIAMQDYTQINRNNNFQTF
PQAVLLLFRCATGEAWQEIMLASLPGKRCDPESDYEPGEEFSCGSNFAIVYFISFFMLCA
FLIINLFVAVIMDNFDYLTRDWSILGPHHLDEFKRIWSEYDPEAKGRIKHLDVVALLRRI
QPPLGFGKLCPHRVACKRLVAMNMPLNADGMVTFNATLFALVRTALKIKTEGNPEQENEE
LRAIIKKIWKRMKPKLLDEVIPPHEEEEVTVGKFYATFLIQDYFRKFRKRKEKGNVNGES
DSTNPSAVQLCKAGLKTLQDLGPEMRLALNADLEDEEEALMDGEDLENAAYKAENGFGPE
TRRGSILTPTGDGGVSNGGLIHRVGSLSKMANGNEHDEHLRRGDSVRSSASHLRRASVKN
SLTDSAHKRPSYYKYGRRDSRDRTWRNGDVDVYGEQGYYSREEDNESITSRDRHYPDDSS
LYRDHRDGHAPYSNGSYGDSYSEGRRTTRRRLLPATPTGRKPSFNIQCLRRQGSSDDLPI
PGTYHPTSPPRRVRPQAFGSYDSHRSSARSAAVSTASWAKPCPRRGRLLYAPLILVEEEG
SPPWGGEGKNGGAARGAADEPPWFSGPAGSSAPPPYRAYTTLRVPSQLGAPFAEKRGSAD
SLVEAVLISEGLGLYARDPKFVAFAKREIADACHMTVDEMESAASDLLSSGSHDFLNAIG
DDPAALYSDEEPIRTSREEEELADEMACVTSF
NT seq
6039 nt
NT seq
+upstream
nt +downstream
nt
atgacgagaaccgacacgcttcactccaccaccagctccactggaacgcagagaagaaga
ggacaacacgccaagaaacaggtgcagggcagcaaccaggtccagcgggcccccagagcg
ttgttctgtctgaagctcaacaacccgatccgacgcgccgcacttcacatcgtggagtgg
aaaccgttcgatatcttcatcctgttagccatctttgctaactgcgtggctctgggagtt
tccaaaccgtttcctgaagatgactccaactccaccaaccatgacctggaacaagtggag
tacgtcttcctcataatcttcaccatagagaccttcctgaagatcctggcctacggtctg
gtgatgcaccccagctcctacattcgcaacggctggaacctgctggacttcgtcatcgtc
attgttgggttattcagcgtcgtcctggagacgatgactcataagtcaagtggcgagcag
gcaaccactcaccacatgccagggaagccgggaggtctggacgtcaaagctctgagagcc
ttcagggtgctgcgacccctcaggctggtctctggagtccccagtctgcagattgtctta
aactccatcatgaaggcaatggttcctctgctacacatcgctctattggttctcttcgtc
atcatcatctacgccatcattggcttggaactcttcatcggacgtatgcacaggacctgc
tattacatcgggacaggtgctgtacaaatggactggtcacacctgtacaccccacgaggt
ccagagaggattatgaagatactttcactcgataactacgtggaggacgagccggtgccg
tgtgcgttcgccggacatggccgccagtgcaccttgaacggctctgagtgtcggggccgg
tgggacggtcccaatggtggaatcaccaactttgataatttcttctttgccatgttgacg
gtgtttcagtgcatcaccatggagggatggaccgatgtgctgtactggatgaacgacgcc
attggctttgagctgccctgggtatactttgtcagtctagtgatttttggatccttcttt
gttctgaatctggttttgggagtcctcagtggagagttcagtaaggaaagggagaaggcc
aaagcccggggagacttccagaagctccgggagaagcagcagatggaggaggatctgtgt
ggatacatggactggatcactcaggcagaagacatggatgaactggacgaggacggaaac
ccacggccatccctgggggatctgtccgataagaagaggaagtttggctggttcagtcat
tccaacgacactcatgcgagtcttccagcgagtgagacagcttcagagaacaccgagaac
atcgatgaagaacacaccaactgctgccaagcctgctgtgcttctgtgatgaagattagc
tgctgccggacgttgcgtcgctggaaccgagtctgtcgcaggaactgtcgcaccgctgtc
aaatcggtgacgttctattggctggttctcctgctggtctttctgaacacctcactcagc
gcctccgaacactacaaccagcccgactggctgacgcaagtccaggacatcgccaacaag
gtgctgctgtctctcttcacggtggagatgctgctgaagatgtacagcttgggtctggcg
cattacttcgtggccttcttcaaccgctttgactgctttgtggtgtgtggtgggatcatc
gagaccattctagtggagctggagattatgcctccattggggatcgccgtgctgcgctgc
gtccgcctgctgcgcatcttcaaggtcacacgccattggacggctctgtccaacctggtg
gcctccctgctgaactccatgaagtccattgcctccctgctgctgctcctcttcctcttt
ctcatcattttcgctctgctcggcatgcagctgtttggaggaaagtttaacttcgatgag
acacagaccaagcggagcacttttgatgccttcccacaggcgctgctcacctgcttccag
atcctgacaggtgaggactggaatgtggtcatgtacgacggcatcatggcgtacggcggc
ccggtgttcccagggatgatcgtctgcgtgtattttgtcatcctcttcatctgtggcaac
tacatcctgctgaacgtcttcttggccatcgccgtggacaacctggctggaggcgatggg
gatgacaagaagaaagaaaagaagacggaagctgagggagaggaggaggccgaaggagaa
gtgaaggtggacatcgatgaagatacagagtatgaggaggaagaggagcttcctgaagga
gaagatgacggaggcgtccagctgaagatggccgacctcgctcctcctaaagagaaagtt
cttcccatcccagagggcagcgccttcttctgtctcggcaaaacaaacccgatccgtgtc
gcctgccacacgctcatccatcaccacatcttcaccaacctcatcctcgtcttcatcatc
ctcagcagctgctcattggctgctgaggatccaatcagagcgcactccttcaggaacaac
attctgggttacgctgactacgccttcacctccatcttcaccgtggagattctgctgaag
atgacggtccacggcgcgttcctgcaccagggatccttctgcaggaactggttcaacctg
ctggacctcctggtcgtcagcgtctcgctggtctccttcttcctgcactccagcgccatc
tctgtggtgaagatccttcgagtcctccgggtgctgcgacctctcagagccatcaacagg
gccaaaggactgaagcatgtggtccagtgtgtgtttgtggccatccggaccatcgggaac
atcatgatcgtcaccacgctgctgcagttcatgttcgcctgcatcggcgtccagctcttc
aaggggaagttctaccgctgcaccgacgaggccaagagcactccggaacaatgcaaagga
accttcgtcgtctacaaggacggagacgtgagccaccccatggtcagggagcggatctgg
ctgaacagcgacttcaacttcgacaacgtcccgatggggatgatggcgctcttcaccgtg
tccaccttcgagggctggcccgcactcctctacaaggccatcgatgccaacggagagaac
tcgggtccgatctacaactacagggtggagatctccatcttctttatcgtctacatcatc
atcatcgccttcttcatgatgaacatcttcgtgggttttgtcatcatcactttcagagag
caaggagagcaggagtacaaaaactgtgagctggacaagaaccagcgtcagtgcgtggag
tacgccctgaaggctcagcctctgaaactctacatccccaagaacccggttcagtacaag
ttctggtccatcatcaattccacggggttcgagtacgtcatgttcgtcctgattctgctc
aacactgtcacactggctgtgcagcactacgagcagaccaagaccttcagcgacgtcatg
gacatcctcaacatggtcttcaccggactcttcaccatagagatgctgctgaagctgctg
gccctgcggctccggcactactttgtggacgcctggaactccttcgatgctctaatcgtg
gtcggcagcgtggtggacatcgtggtgacagagttcagcagtggcgaggacagctccagg
gtgtccatcaccttcttccgcctgttccgagtgatgcggctggtcaagctcctgaataaa
ggggaggggattcgcacactgctgtggacattcatcaaatcactgcaggcgctgccgtat
gtcgctttgctcatcgccatgatcttcttcatctacgctgtcatcggcatgcagacgttc
gggaagatcgcaatgcaggactacactcagatcaacagaaacaacaacttccagacgttt
cctcaggccgtcctgctcctcttcaggtgtgccacaggtgaagcgtggcaggagatcatg
ttggccagccttccagggaaacgctgcgatccggagtcggactacgaaccaggagaggag
ttcagctgcggaagcaactttgccatcgtttacttcatcagcttcttcatgctgtgtgct
ttcctgatcatcaacctgtttgttgccgtcatcatggacaactttgactatctgacgcgc
gactggtccatcctggggccacatcatctggatgaattcaaaaggatctggtcggaatac
gatccagaggccaaaggtcggatcaaacatctggatgtggtggcgctgctccggaggatc
cagcctcctctggggttcggcaagctctgtccgcacagagtggcctgcaagcgcctggtg
gccatgaacatgcctctgaacgccgacggcatggtgaccttcaacgccacactgttcgct
ctggttcgcaccgcgctcaagatcaagaccgaaggtaaccctgagcaggagaatgaggag
ctgagagcgatcatcaagaagatctggaagcggatgaagccgaagctgctggatgaggtc
attccgccacatgaagaggaggaagtcaccgtcggaaagttttatgcaactttcctcatt
caggattatttcaggaagttcaggaagaggaaggagaaaggaaacgtgaacggagaatct
gactctacgaatccgtctgctgttcagctgtgtaaggcgggtctgaagacgctgcaggat
ctgggtccagagatgcgtctggctctgaacgcagacctggaggacgaagaggaggcgctg
atggacggcgaagatctggagaacgctgcctacaaggccgaaaacggatttggaccggag
acccgacgaggctccatactgacacctactggcgatggcggcgtctccaacggcggtctc
atccaccgagtcgggtcgctcagcaagatggcaaatggaaacgaacatgacgagcatctt
cgtcgtggagacagcgtgaggtcatcagcgagtcatctgcgccgggcgtccgtgaagaac
agcctgacagactccgcccacaagagaccgtcatactacaaatatggacggagagactcc
agggacagaacctggaggaacggagacgtggatgtctacggagagcagggttactacagc
cgagaggaggacaacgagagcatcacctccagagacagacattaccccgacgactcgtcg
ctgtacagagaccaccgcgacggccacgccccctacagcaacggtagctatggcgacagt
tacagcgagggcaggaggacgactcgcagacgcctacttcctgccacacccacaggccgg
aaaccgtccttcaacatccagtgtctgaggcggcagggcagcagcgacgacctgccgatt
cccgggacgtaccacccgacatcaccaccgcgccgcgtgcgacctcaggctttcggcagc
tacgactcccaccgttcctccgcccgctccgctgccgtgtccacggcgtcctgggccaag
ccatgcccccgccgcgggcggctcctctacgcgccgctcatcctggtggaggaggagggc
agcccgccctgggggggtgagggcaagaacggaggggcagcaagaggagcagcagatgaa
ccgccctggttcagtggaccagccgggagctcagctccgcccccgtaccgggcctacacc
accctccgggttccctcgcagctcggcgctccgttcgctgagaaacggggatcggccgac
agcctggtggaggcggttctgatctcggagggactcggcctctacgctcgagaccccaag
tttgttgcgtttgctaagagagagatcgcagacgcgtgtcacatgacggtggacgagatg
gagtcggcggccagcgacctgctgagctccgggagccacgacttcctgaacgccatcggc
gacgatccggcggcgctctacagcgacgaggagccaatcaggacgagccgcgaggaggag
gagctggctgacgagatggcctgcgtgacgtcattctga
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integrated database retrieval system
