Gambusia affinis (western mosquitofish): 122843315
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Entry
122843315 CDS
T07758
Symbol
col22a1
Name
(RefSeq) collagen alpha-1(XXII) chain isoform X1
KO
K16630
collagen type XXII alpha
Organism
gaf
Gambusia affinis (western mosquitofish)
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Gene cluster
GFIT
Motif
Pfam:
Collagen
VWA
VWA_2
Motif
Other DBs
NCBI-GeneID:
122843315
NCBI-ProteinID:
XP_043993911
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Position
LG14:complement(22818387..22895354)
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AA seq
1621 aa
AA seq
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MEFRLGFRITLVCFVLALTLSGEGVDAQRAGCKNVHYDLAFILDTSSSVGKENFEKIRQW
VANLVESFDVAPDKTRVAVVRYSDRPTPEFTLGKYRTLEDVKRAARNIRYLGGDTRTGDA
ISYTTTNIFTERNGARPAERGIQKVAILLTDGLSQDYVLEPSKAAARAGIRMFAVGIGEA
LKEELEEIAAEPKNAHVFHVTDFNAIDKIRGRLRRRLCENVLCPKMKVQPDRFKPNSTSY
GLEEVPGFDLMEYFNVKDILGTRVDEGQSSYVRLGTMPIVQQTEDVFAQGLPDEYAFVTT
FKFRKTSRREDWYLWQIFDKYGIPQVSIRLDGENKAVEYNAVGLTKDAVRAVFKNPEVDN
LFDRNWHKIGLSVEAKSVALYLDCKHIQTLPIEDREDIDIQGKTVIGKRLYDSVPIDFDL
QRMIIYCDSKQAELETCCDLPTGPCPKKVVTEAPPVRVPTPTPTSAEQQRGPQANCSCPP
GAKGDVGARGLPGLKGDKGDFGPKGAIGPPGIKGERGESGKLSSVRGDRGEKGDRGSIGL
TGSPGQKGEKGTGGVPGIDGLTGDKGDKGEAGRAGAAGLPGPAGQKGIQGDAGIPGAPGP
KGVSGDSGVKGEKGTPGAGGLPGVDGLPGKSGLPGKDGLRGLTGAPGPNGIKGNKGERGL
PGLPGDMVQQEGLRGERGEPGPPGPPGADGRPGPAGPAGPPGLPGEHGDPGQMGKKGENG
LPGVDGLPGPPGPLGPPGPPGGPGPMGQPGLPGELGFSGKPGEPGKPGMPGKDGLDGLPG
TDGSVGPRGERGADGFPGKSGPKGDEGPPGPRGPPGERGEAGAPGQPGADGARGDRGTPG
ERGTEGPFGPKGDKGDKGEVGPRGLPGVPGNVANVIPEPGEPGKPGEKGEKGDQGKPGEL
GPRGLPGEQGFQGQLGPPGPKGDTGLTGEIGRVGDPGPPGAAGSQGPRGAPGSVGIPGII
GPPGPAGQRGDKGEQGKPGQSGSRGPPGEPGIIGPPGAPGKGKDGQNGEPGPPGNQGLPG
VKGPPGQRGPPGLPGDRGSPGEGKEGPPGPPGKNGEPGPAGLRGQPGVAGPQGPAGHNGL
PGRPGEKGSQGEPGKSADLSDLNLKDICSDCPAGPPGPPGLPGVPGDKGHQGPPGKNGQD
GYSGPPGPSGPQGPPGGDGAKGIKGDQGPPGGPGDKGEKGHPGPPGHPGPAGLMGAPGND
GQPGQIGPPGPPGEKGKEGLKGIQGPPGLPGLIGQPGKMGKDGRPGESGEPGKQGEPGPP
GNPGVRGLPGFKGHRGEPGPPGGKGEDGKPGSAGRDGKPGKEGPKGPPGPEGLLGPRGEP
GKPGEPGPSGKSGLPGTPGQRGDKGEPGNPGLPGFSGPKGPGGPPGPIGPEGKQGMPGRL
GDRGLRGDKGDPGTKGEKGQTGDPGMPGNPGPPGRKGHTGIMGMSGPPGEIGAPGPQGPS
GNPGLPGPRGESVSLEQMRRLVQEELAKQLEAKMAYLMAQIQPAHVKSTAGRPGPPGPPG
KEGIPGRQGSPGEPGIPGQNGGEGPRGPMGPKGDKGARGEKGEPGVGERGEQGPVGPIGP
AGLPGYGKDGSPGQVGAQGEPGNPGPHGQAGPPGPPGQCDPSQCAYYASLAQRPHTKNVK
G
NT seq
4866 nt
NT seq
+upstream
nt +downstream
nt
atggaattccgactgggatttaggatcaccctggtctgcttcgtcctggccttgaccctt
tccggggaaggagtggatgcacaaagggcaggttgtaagaatgtccactacgacttagcg
tttattctggatacctcttccagtgtggggaaggaaaattttgagaaaattaggcaatgg
gtagccaacttggtagagtctttcgacgtagcgcccgacaagacaagagtagcagtggtt
cgctacagtgacaggccgaccccagagttcaccctggggaaatacaggaccctggaagac
gtgaagcgagctgcccgtaacatacgctacctagggggagacaccaggaccggggacgct
atcagctacaccaccacgaacatcttcacggagcggaacggtgcgaggccggccgagcgc
ggcattcagaaggtggccatcttgctaacggacggcctaagtcaggattacgttctggaa
ccttccaaggcagccgccagagctggcatccggatgttcgccgtgggcatcggggaggcg
ctgaaggaagagctggaggaaatcgcggcagagcctaaaaatgcccacgtctttcacgtg
accgacttcaacgccattgataaaatccgaggcaggctgaggaggaggctgtgcgaaaat
gtcctgtgtccaaagatgaaggttcaacctgatcgcttcaagcccaacagcaccagttat
ggtcttgaagaggttccagggtttgacctgatggagtacttcaacgtgaaagacatcctg
gggaccagagtcgatgaaggccagagttcatatgttcgcctcgggacgatgccgatagtc
cagcagacagaggatgtgtttgctcagggtttaccagatgaatacgcctttgtgacaacc
ttcaaattcaggaaaacctcaagacgggaagactggtacctctggcagatttttgacaaa
tatggaatcccgcaggtgtccatccgtctggacggtgagaacaaagccgtggagtacaat
gcagttgggttgacgaaagacgccgtcagagctgtgttcaagaatcctgaagtcgacaac
ctcttcgaccgcaactggcacaagattggcctcagcgtggaggcgaagtctgtcgccctg
tacctggactgcaaacacatccagactctgccaatcgaagaccgggaagacatagacatt
caggggaagacggtgattggcaagagactgtatgacagcgttcccatagactttgacctc
caaaggatgataatttactgtgattccaaacaagcagaactggaaacgtgctgtgatctc
cccactgggccgtgccctaaaaaagtcgtgaccgaggccccccctgtgcgggtccccaca
ccgacaccgactagtgcagagcagcaaagaggtcctcaggcaaactgctcctgccctccg
ggggccaagggagacgtcggagcgcgcggtcttcctggtctaaagggtgacaagggtgac
tttggccctaagggtgccatcgggccgccgggcatcaaaggggaaagaggagaatctggc
aaactgtcctctgtcagaggtgacagaggggagaagggtgatagaggctctatagggtta
acaggttctcctggacaaaagggagagaagggcaccggtggtgttcctggaattgatggt
ctaactggtgacaaaggggacaaaggcgaagcaggcagggccggtgctgcagggttaccg
ggtccagccgggcagaagggaatccaaggagatgcaggaattccaggtgcgcccggaccg
aaaggcgtctctggagattctggtgtgaaaggagaaaaaggaactccaggagctggtggt
cttccgggtgtcgatggattgccaggaaaatccggactacctggaaaagatggtctaaga
ggactgactggagcacctggaccaaacggaatcaaaggcaacaagggggagagaggactt
cctggactacctggggacatggtgcaacaagaaggcctacgaggtgaaaggggagagcct
ggacctcctgggcctcctggagcagacggtcgaccaggaccagctggtcctgctggtcca
ccgggtctgcctggtgaacacggcgatcctggccaaatgggaaagaaaggtgaaaatgga
ctgccgggagttgacggccttcctggacctccaggtccactcggtccgccgggtccaccg
gggggaccgggaccaatgggacagcctggtctacctggtgaactaggattttctggtaaa
ccaggagagccaggaaaacctggaatgcctgggaaggatggcctggatggtcttcctggc
actgacggctctgtggggcccagaggagaacggggagcagacggttttcctggaaagtct
ggacctaagggtgatgaagggcctcctggaccaagaggtcctccaggggagcggggagaa
gctggggcccccggtcaaccaggtgctgatggcgcacgaggagacagagggactccggga
gaaagaggaacagagggaccatttgggccaaaaggtgacaagggtgacaagggtgaagtt
ggaccacgaggactccctggagttccaggaaacgttgctaatgtcatcccagagcctgga
gagccggggaagccgggagagaagggggagaaaggcgaccaaggaaaaccaggagaattg
ggtccaagaggcttacctggtgaacaaggtttccaaggacaactaggaccacctggtcca
aagggtgatactggactcacaggggagatcggccgtgtaggagaccctggtccacctggt
gcggcaggatcccagggaccacgcggtgcaccaggcagtgtgggtattccaggcatcatt
gggcctccgggtccagccggacagagaggagataagggagagcaaggtaaaccaggacaa
tctggttcccgaggcccaccgggagagcctggtatcattggacctcctggagcacctggg
aagggcaaagatggccaaaacggagagccgggaccaccagggaatcaaggactacctgga
gtcaagggcccacctgggcaacggggaccccctggattacctggggacaggggctctcca
ggggaagggaaagagggacctccggggcctccagggaaaaatggggaaccaggacctgcg
gggttgagaggccaaccaggagttgcaggtcctcaaggtccagcagggcacaatggttta
ccaggaaggccaggagaaaagggatctcaaggagaacctggaaaatcagcagatctatcc
gacttaaatctgaaggatatttgctcagactgccccgcaggtccacccggaccacccgga
ctaccaggagtcccgggagataaaggacaccagggacctcctggaaaaaatggccaagat
ggatattcagggccccctggaccatccggacctcaggggcctcctggaggtgatggcgcg
aagggcataaaaggggatcaaggaccccctggaggtcctggagacaaaggagaaaagggc
catccaggaccccctggccatccaggtcctgcaggattaatgggtgctcctggtaacgac
ggccaacctggccaaattggacccccaggaccccctggagaaaagggcaaagagggactc
aaaggaatccaaggacctccgggtcttcccggcttgataggtcagcctgggaaaatggga
aaagatggcagaccaggtgaatcaggagaacctgggaaacaaggtgaacctggacctcca
ggaaaccctggagtccggggactccctggcttcaagggccacagaggagagcctggacct
ccaggaggaaagggagaggatgggaaacccgggtcggcaggacgtgacggcaaaccggga
aaggagggccccaaaggacctcctggccccgagggacttcttggaccgaggggagagccg
ggtaagccgggcgagccgggaccttctggaaaatcaggactccctggaacgccgggtcag
agaggagacaagggagaaccaggtaaccccgggttaccaggcttcagcgggcccaaagga
cctggaggcccacctggtcccattggccctgaaggaaaacagggaatgccaggtcgactt
ggagatcgaggccttagaggagataagggagaccccggaacaaaaggagaaaaaggacag
actggagatcctggtatgcctggaaatcccggtcccccaggtagaaagggccacacaggg
ataatgggaatgtcaggaccaccaggtgaaatcggagccccggggcctcagggaccttca
ggaaaccctggtctcccaggacccagaggcgagtcggtgtcactggagcagatgaggagg
ctggtccaggaggagctggccaaacaattagaagccaaaatggcttacctcatggctcag
atccagcccgcacatgtgaagagtacagcgggacgtcctggacctccaggccctccaggt
aaagaaggcatccctggacgacaaggttcacctggagagccaggtatacctggacaaaat
ggtggcgaaggacccaggggacccatgggtcctaagggtgataaaggagcaagaggagag
aaaggagaacctggtgtcggtgagagaggggagcagggccctgtcggccccataggtcca
gctggtctaccgggatacggcaaagacggaagccctggtcaggttggagcccagggagag
ccaggaaaccccgggccacacggtcaagctggacctccggggccccccggccaatgcgac
cccagccaatgcgcctactatgccagcctggcccagagaccccacaccaaaaacgtaaag
gggtaa
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