Gottfriedia acidiceleris: MY490_05610
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Entry
MY490_05610 CDS
T08082
Name
(GenBank) ATP-dependent RecD-like DNA helicase
KO
K03581
exodeoxyribonuclease V alpha subunit [EC:
3.1.11.5
]
Organism
gaj
Gottfriedia acidiceleris
Pathway
gaj03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gaj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
MY490_05610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gaj03400
]
MY490_05610
Enzymes [BR:
gaj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
MY490_05610
DNA repair and recombination proteins [BR:
gaj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
MY490_05610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_19
AAA_30
HHH_4
SH3_13
UvrD_C_2
Viral_helicase1
AAA_11
HHH_5
AAA_12
AAA_22
UvrD-helicase
T2SSE
HHH
AAA_18
nSTAND3
DEAD
SLFN-g3_helicase
DUF4926
AAA
TsaE
AAA_28
AAA_29
NB-ARC
TrwB_AAD_bind
RsgA_GTPase
AAA_16
NTPase_1
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
UPM55317
LinkDB
All DBs
Position
1190253..1192610
Genome browser
AA seq
785 aa
AA seq
DB search
MQTQSEMELFVDETPYIKGHITTIIFYNAENFYTVAKVKVVDTNLSNCEQEMTITGNIPR
MNEDETYTFKGIVKDHPRYGKQFQISSFEKELPSTKKGVIQYLSSDLFKGIGKKTAEKIV
DHLGEGAINKILDNADSLEGVPGLAKSKAKEIYETILSHQGLEKVISFLSSYGIGTGLSI
KIYKTYNESTLDVIRTNPFKLIEDVDGIGFGRADEIGRAIGITGNHPDRIRAGCIYILEH
LSMQEGHVYITQDQFIDETRQLLMKQDKELVEAVDISREMKRLVADGKLVMEDERIYLAA
LYYAEKGIVNAIQKLLSSAPDLGEMTETRFSKELEDLESKMNVKYAPSQAQAIKKAMESA
MMVLTGGPGTGKTTVIKGIVNLFSTIHDLSLDQHSYPKDDPFPYLLAAPTGRAAKRMSEA
TGLPAVTIHRLLGWTREGEFSHHEENPLNGKLLIIDEFSMVDVWLGNQLLKSIPEGCQVI
FVGDEDQLPSVGPGQVLKDLLNSGTVPTVRLKDIYRQSEDSSIITLAHYIKDGTISEDLF
EQRKDRSFIGCSSQQVVEVVKKVCENANKKGFPVRDIQVLAPMYRGPAGIDALNEGLQEV
FNPKKEKQREMNFGDTTFRTGDKVLQLVNVPENNVFNGDMGEIVNIFFAKENVEQQDIMI
VSFDGNEVTYTRPDFSQLTLAYCCSIHKSQGSEFDIIVLPIVKSYYRMLRRNLIYTAVTR
SKKFLIMCGEQDAFIQGIGRTDDGQRQTTLCMKLKGIENGEVQLNEDLPFQLSDELPNLS
PYDFM
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atgcaaacccaaagtgaaatggaattgtttgttgatgagacgccctatattaaagggcat
atcacaacaatcatcttttataatgcagaaaatttttatactgttgcgaaggtaaaagtg
gttgatacaaatttatcaaattgtgaacaggaaatgaccattactgggaatattccaagg
atgaatgaagatgaaacatatacatttaaggggattgtaaaagaccatccgaggtatggt
aaacaatttcaaatttcttcatttgaaaaagagcttccatctaccaaaaaaggtgttatt
caatatttatcctcagatttgtttaaaggaataggaaagaaaacagctgaaaaaatcgtt
gatcatttaggtgaaggtgcaattaataaaattttagataatgctgatagcttagaaggt
gttcccgggctggcaaaatcaaaagctaaagaaatttatgaaacaattctatctcatcaa
ggtcttgaaaaagtaatcagctttttaagtagctacggcattggaacaggtttatccatt
aaaatttataagacttataatgaatcaactctagatgttatcagaacaaatccatttaag
ttaattgaagatgtagatgggattgggtttggaagagcagatgaaattggtcgagcaatc
ggtattacgggaaatcatccggatcgtatacgtgcgggttgtatttatattttagaacat
ttatcgatgcaagaaggccatgtgtatataacgcaagatcagtttattgatgaaactaga
caattattaatgaaacaggataaagagcttgtcgaagcagtcgacatttctcgggaaatg
aaacgattggtagcagacggaaagctagtaatggaagatgagagaatctatttagctgcg
ctttattatgctgagaaaggcattgtaaatgcaatccaaaaattattaagcagtgctcca
gatttaggagaaatgactgaaactagattttcaaaagagctagaagatctcgaatcaaaa
atgaatgtaaaatatgccccttcacaagcccaagcaatcaaaaaggcaatggagtcagct
atgatggtccttacaggtggaccagggacaggtaaaacgacagttattaaaggaattgtt
aatctgttttcaactatccatgatttatcattagatcagcattcttacccaaaagatgat
ccattcccttatttgcttgcagcacctacaggtagagcggcaaaaagaatgagtgaagca
actggcttaccggcagtgacaatccatcgcttactcggttggacaagagaaggggagttt
agccatcacgaggaaaatcctttaaatggaaagttgctaatcattgatgagttttcaatg
gttgatgtttggttagggaatcaattactcaaaagcattccagaaggctgccaagtcatt
tttgtaggggatgaggatcaattaccttctgttggcccaggtcaggtcttaaaggattta
ttaaactctggtacagttccaacagtacgattaaaagacatttaccgtcaatcagaagat
tcatcgatcatcacgcttgcacattatataaaagatggaacaatatccgaggatttattt
gaacaaagaaaagatcgttcattcatcggttgttcaagtcaacaagttgttgaagtcgtc
aaaaaagtgtgtgaaaacgccaataaaaaaggttttcctgtaagagatattcaagtttta
gctccgatgtatcgtggtccagcaggaattgatgccctaaatgaagggctacaagaggtg
tttaaccctaaaaaagaaaagcaacgtgaaatgaattttggtgatacaacttttcgtaca
ggtgataaagttctccaactcgtaaacgttcctgagaataatgtttttaatggagatatg
ggtgaaattgtcaatatttttttcgccaaagaaaatgtagagcaacaagatattatgatc
gtttcatttgatggaaatgaagtgacgtatactagaccagatttttctcaattaactctt
gcttactgttgttcaatacataagtctcaaggtagtgaatttgatattattgtgcttccg
attgtcaaaagttattatcggatgcttcgaagaaatttaatttacactgcagtgacaaga
agtaagaagttcttaatcatgtgcggagaacaagatgcatttattcaaggcattggaaga
acagatgatggtcaaagacaaactactctatgtatgaaactaaaagggattgaaaatggt
gaagtacaactaaacgaagatttaccatttcagctttcagacgaattaccaaatctttca
ccttatgatttcatgtaa
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