Gottfriedia acidiceleris: MY490_20240
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Entry
MY490_20240 CDS
T08082
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit UvrB
KO
K03702
excinuclease ABC subunit B
Organism
gaj
Gottfriedia acidiceleris
Pathway
gaj03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
gaj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MY490_20240 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gaj03400
]
MY490_20240 (uvrB)
DNA repair and recombination proteins [BR:
gaj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MY490_20240 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
MY490_20240 (uvrB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrB_inter
Helicase_C
UvrB
ResIII
UVR
DEAD
AAA_30
AAA_7
HEM4
P-loop_SecA
AAA_19
AAA_22
UB2H
AAA
AAA_16
HerA_C
AAA_6
TrwB_AAD_bind
AAA_25
Motif
Other DBs
NCBI-ProteinID:
UPM54043
LinkDB
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Position
complement(4293648..4295633)
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AA seq
661 aa
AA seq
DB search
MEQEFEVVSNYSPQGDQPNAIKQLVDGIKNGKKHQVLLGATGTGKTFTISNVIKEVGKPT
LVFAHNKTLAGQLYSELKEFFPNNAVEYFVSYYDYFQPEAYVPQTDTYIEKDSSINDEID
KLRHSATSSLFERKDVIIVASVSCIYGLGSPEEYRELVCSLRIGMEISRDDLLHKLVDIQ
YARNDIDFSRGTFRVRGDVVEIFPASRDEHCIRVEFFGDEIERIREVDALTGEILGDREH
VAIFPASHFVTREEKMKIAIKNIEVELEERLKEMRDNGKLLEAQRLEQRTRYDLEMMNEM
GFCSGIENYSRHLTLRPPGSTPYTLLDYFPEDFLMVIDESHVTVPQIRGMFNGDQARKQV
LVDHGFRLPSALDNRPLKFAEFEDKVQQTIYVTATPGPYELDLCPEKVEQIIRPTGLLDP
TIDVRPIEGQIDDLIDEVRNRIAKNERVLITTLTKKMSEDLTDYLKEIGIKVNYLHSEIK
TLERIEIIRDLRLGKYDVLIGINLLREGIDIPEVSLVVILDADKEGFLRSERSLIQTIGR
AARNSNGHVIMYADKMTNSMDIAINETKRRREIQEEYNKKHGITPKTIIKQVRDVIRATS
VAEEEEVYENGISAKYKKMNKKERHLFIQSIEMEMKDAAKALDFERATELRDLILELKSE
R
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atggagcaggaattcgaggtagtttctaattattcacctcagggtgaccagccaaatgcg
attaagcagttagttgatggtattaaaaatggtaaaaagcatcaagttttattaggtgcg
acaggtacgggaaaaacgtttaccatttcaaatgtaattaaagaagtaggaaaaccaaca
ttagtatttgctcacaataaaacattagcagggcaattatatagtgaattaaaagagttt
tttcctaataatgcagttgagtatttcgttagttactatgattattttcagccagaagct
tatgtacctcaaacggatacttatattgaaaaagattcaagtattaatgatgaaattgat
aaattacgtcactctgcgacttcctccctatttgaacgtaaggatgtcattattgtagcg
agtgtttcttgtatttacggtttaggttctcctgaagaatatcgtgagttagtttgttct
cttcgtattggaatggaaattagtagagacgacctattacataaactagtagatattcag
tatgcgcgtaatgatattgacttctcacgtggtacattccgagttcgtggtgatgttgtt
gaaatattcccggcatcacgtgatgagcactgtattcgtgtagaattttttggtgatgaa
attgagagaattagagaagtggatgcattaacaggcgaaattttaggtgatcgtgaacac
gttgcaattttcccggcttctcacttcgttacacgtgaagaaaaaatgaaaattgctatt
aaaaatattgaagttgagttagaagaacgattaaaggaaatgagagataacggtaagttg
ctagaagctcaaaggcttgaacaacgaactagatatgatttagaaatgatgaacgagatg
ggattttgttcaggaattgaaaactattcccgtcatctgacgctgagaccacctggttct
acgccttatacattattagactattttccagaagatttcttaatggtaattgacgaatca
catgttacagttccacaaatccgaggaatgtttaatggtgaccaagctcgaaagcaagta
ttagtagatcatggattccgtctgccttcagcattggataatcgacctttaaagtttgca
gagtttgaggataaagttcaacaaactatttacgtaactgctacacctggaccatatgag
ctagatctgtgtccagagaaagtagaacaaattattcgtccaacaggtctactagatccg
acgatagatgttcgaccgattgaaggtcaaattgacgatttaatcgatgaagttcgtaat
cgcattgctaaaaatgagagagtactaattactactctaacgaagaaaatgtctgaagat
ttaacggattatttgaaagaaatcggaattaaggttaactatttacattctgaaattaaa
acgcttgaacgaattgaaattattcgggaccttcgtttaggtaaatatgatgtgttaatt
ggtattaaccttttacgtgaaggtatagatattcctgaagtttcattagttgtaatttta
gatgcagataaagaagggtttttacgatctgaacgttcattaattcaaacaattggtcga
gctgcaaggaattctaatggtcatgttataatgtatgctgataaaatgacgaattcgatg
gatattgctattaatgaaacaaaacgtcgtcgtgagattcaggaagaatataacaaaaaa
catggaatcactccaaaaacgatcattaagcaagtacgtgatgtgattcgcgctacttct
gtagctgaagaagaagaagtttatgaaaacggcattagtgctaaatataagaaaatgaac
aaaaaagaacgtcatttatttattcaatcaattgaaatggaaatgaaggacgcagcgaag
gcgcttgattttgaacgagcaacagaacttcgtgacttaatattagaattgaagtctgag
aggtga
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