Glycocaulis alkaliphilus: X907_1145
Help
Entry
X907_1145 CDS
T05786
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
gak
Glycocaulis alkaliphilus
Pathway
gak02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
gak00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
X907_1145
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
gak03021
]
X907_1145
Transcription machinery [BR:
gak03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
X907_1145
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_ner
Sigma70_r3
Sigma70_r2
Sigma70_r1_1
Sigma70_r4
Sigma70_r1_2
Imm3
HTH_37
Motif
Other DBs
NCBI-ProteinID:
AZU03683
UniProt:
A0A3T0E8G4
LinkDB
All DBs
Position
1186295..1188376
Genome browser
AA seq
693 aa
AA seq
DB search
MWQLVFRRPREFKSGMTKAATETAEAAPENQDGPLLDLNDLSVKAMVKTAKKRGYVTHDE
LNKVLPSEEFSSEQIEDVLSQLSEMGITVVDSEDEVEENDAAAGDDEEEDDGRSRAVAAK
SKTAVAGQNTTSAQDRTDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRNAMIRGLCES
PLTFEAIMVWREELQSGQVLLRDIIDLDATYGGVREDHSETGAPDAGRGPAANIRAQVRS
RAEESEEKTGEEGEEGENAASTDDEEDDEDGANLSLAAMEAELREGVMETLDAVAGDFNT
FRKLQDKLVGLRMEGKDLSKKDRETYEGVRESIVANLNSLNLNNARIEALVEQLDAINKR
LVVLEGKLLRSAEAHGVPRHEFMQAYQGHELDPNWLDDWKAKSAAWKKFAEREEKEAAQI
REHIAELAQESGVPIDDFRRIVATVQKGAREARIAKKEMVEANLRLVISIAKKYTNRGLQ
FLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETI
NKIVRTSRQMLHEIGREPTPEELAEKLSMPLEKVRKVMKIAKEPISLETPIGDEEDSHLG
DFIEDKNAVLPIDAAIHSNLRETTTLVLASLTPREERVLRMRFGIGMNTDHTLEEVGQQF
SVTRERIRQIEAKALRKLKHPSRSRKLRSFLDS
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
ttgtggcagctggtattccggcggccaagggagttcaagtcaggcatgaccaaagcagcg
accgagacggctgaagcagccccggaaaatcaggacggcccgcttctcgatctcaatgac
ctgtcggtcaaggcgatggtgaaaaccgccaagaagcgcggttatgtcacccatgacgag
ctcaacaaggttctcccgtcagaagaattttcatccgagcagattgaagacgtgctctcc
cagctgtcggagatgggtattaccgtcgttgattccgaggacgaggtggaagagaacgac
gcggctgcaggcgatgatgaggaagaagatgatggccgctcccgcgcggtagccgccaag
tcgaaaaccgctgtcgccgggcagaacaccacctccgcgcaggaccgtaccgacgacccc
gtgcgcatgtatctgcgcgagatgggctctgtggagctgctttcgcgcgaaggcgaaatc
gccatcgccaagcggatcgaggccggacgcaacgccatgatccgcgggctttgcgaaagc
ccgctgacgtttgaagccatcatggtctggcgcgaagagctgcagtccggccaggtgctg
ctgcgcgatattatcgatctggacgccacttatggcggcgtacgtgaggatcactccgaa
accggcgcgcccgacgccggacgcggccctgccgccaatatccgcgcccaggtgcgttcg
cgcgccgaggagagcgaggaaaagaccggcgaagagggcgaggaaggcgaaaacgcagcc
tcgaccgatgacgaggaagatgacgaggatggtgcaaacctgtccctcgcggccatggaa
gccgagctgcgcgaaggcgtcatggagacgctggacgcggtagcgggtgatttcaacacc
ttccgcaagcttcaggacaagctggtcggcctgcgcatggagggcaaggacctctccaaa
aaggatcgcgagacctatgagggcgtgcgcgaatccatcgtcgccaatctcaactcgctg
aacctcaacaatgcgcgtatcgaggcgctggtcgaacagctggacgccatcaacaagcgt
cttgtggtgctggagggcaagctcttgcgctctgccgaggcacacggcgtgccgcgtcat
gagttcatgcaggcctatcagggccatgagctggacccgaactggctggacgactggaag
gccaaatcggctgcgtggaagaagttcgccgagcgcgaggaaaaggaagccgcccagatt
cgcgagcacatcgccgagctggcgcaggaatccggcgtgccgatcgacgatttccgccgc
atcgtcgcgaccgtccagaagggcgcgcgggaagctcgcattgccaagaaggaaatggtc
gaagccaatctgcgcctcgtcatctccatcgccaagaaatacaccaatcgcggcctgcaa
ttcctggatctgatccaggaaggcaatatcggcctgatgaaggcggtcgataagttcgaa
taccgccgcggctacaaattctccacctacgcgacctggtggatccgtcaggccattacc
cgctccatcgcggaccaggcccgcacgatccgcatcccggttcacatgatcgagacgatc
aacaagatcgtgcgcaccagccgccagatgctccacgagatcggccgtgagccgacgcct
gaggagctcgctgaaaagctctccatgccgctggaaaaagtgcgcaaggtgatgaagatc
gccaaggagccgatctcccttgaaacgccgattggcgatgaggaagattcacatctcggc
gatttcatcgaggacaagaatgcggtcctgcccatcgatgcggcgatccattccaacctg
cgcgagaccacgacgctggtgctcgccagcctcaccccgcgtgaggagcgcgtgctgcgc
atgcgcttcgggatcggcatgaacaccgatcacacgctggaggaagtcggccagcaattc
tcggtgacgcgtgagcgtatccgccagatcgaggcgaaggccctgcgcaagctgaaacac
cccagccgcagccgcaaactgcgcagcttcctggatagctag
DBGET
integrated database retrieval system
