Gordonia amicalis: IHQ52_13755
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Entry
IHQ52_13755 CDS
T08222
Symbol
recC
Name
(GenBank) exodeoxyribonuclease V subunit gamma
KO
K03583
exodeoxyribonuclease V gamma subunit [EC:
3.1.11.5
]
Organism
gami
Gordonia amicalis
Pathway
gami03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
gami00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
IHQ52_13755 (recC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gami03400
]
IHQ52_13755 (recC)
Enzymes [BR:
gami01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
IHQ52_13755 (recC)
DNA repair and recombination proteins [BR:
gami03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
IHQ52_13755 (recC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exonuc_V_gamma
RecC_C
Motif
Other DBs
NCBI-ProteinID:
UKO90131
LinkDB
All DBs
Position
3004742..3008188
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AA seq
1148 aa
AA seq
DB search
MLILHRAERTDTLAEALADVLSTPLDDPMRTEIVSVPAAGVERWLAQHLARRLGSGAGLS
DGIAANIDFTGPGRLADAISAAVLAGDRFTADTPLSTVNPWRATELTWPVLRVLDERIDD
PDLTVIARHIGAGDAESPRVGRRYATARHLAELFERYGRSRPSMIAGWADGDDLDGAGAP
LRDDLAWQAGFWRAVRAEIGQPHPAEVLGEVCERLRSDPGVADLPGRLSVFGPTRITESF
RNIISAVSAHHDVHLFVPHASPRLWEELRAVGGGVSAATSTVGVPPRRRGRPVPELRNPL
LAGLSRDLQELQLRLGDVVDRDVHHPPATPLPDTLLGALQAGIRDDAGARDDTGVSPPAE
CADDGSVEVHACHGPERQIEVLRDRLLHLFADDPTLEPRDVLIMCPDVETFAPLIRGAFG
QAGLPHPAFDLRVRLADRGVRQVNPVIDTVVGVVELAAGRVTAGDVLDLLGAEPVRTRFA
MTDDDLALVREWLGHSNVRWGLGTAERARFGLERFRQGTFDAGLDRIALGVVAEETDDEW
LGTALPLAGVESTGIDLVGRLDEFLDRLGRVLADLTTTAPAHRWAETLVEAVGSLTATAP
ADDWQRAQAIRMLEDAFGTTEEVLRLADVRDLLSALIAGRPTRSNFRTGELTVCTMVPMR
SVPHRVIVLLGIDAEVFPRVQRIDGDDVLGVDPLVGERNPRDEDRQCFLDAIGAAQDNLL
VFYSGADPVSGRHIPPAVVVSELIDTVDGLTGSDRPTIVRRHSLHGFDARNFVDGGVRGI
AGPFSHDASLLAGATALRGPADPVVPSAREILPAPEPTLELADIDLASLIDFHVDPITAF
VRQRLGARIPDDETPHDDQLDVELDPLDKWGIGDRFLTRMLAGVSIVDCEAAELRRGTLP
PFAFGTRELAAISRAVTRLHGVVAPLRPGSPETLDILVTLPDGRRVHGTVGEVFTADDGQ
ARLVRATYSRLKAKQQLSAWITLLAVAAAATQGNAGAGKVGSAVSVGRAARGGGTTTLTL
RRPEDPVPLLDQLVRLRDEGLRRPLPLPLEPAFTFVDNDGPGRRSHWALNSARKVFDDTF
GPRHDRYLKLAFGGDVLTDVEFDALLEERAPGDRALGGVELAVAEDEPLFSGLARAVWVP
VGQHREGS
NT seq
3447 nt
NT seq
+upstream
nt +downstream
nt
atgctgatccttcaccgcgccgagcgcaccgatacgttggccgaggcgttggccgacgtc
ctctcgacaccgctcgacgatccgatgcgtaccgagatcgtgtcggtcccggcggccggt
gtcgaacgctggctcgcacagcacctcgcccgccggctcggttctggtgcgggactgtcg
gacggcatcgccgccaacatcgacttcaccggtcccggacggctggccgacgccatctcg
gccgcggtgctcgccggtgaccggttcacggccgacaccccgttgtcgacggtgaacccc
tggcgcgcaacggaattgacctggccggtgctccgagtcctcgacgaacggatcgacgac
cccgatctgacggtgatcgcccgtcacatcggtgcgggtgacgccgagtcgccccgggtc
ggacgccgctatgcgacggcacgccacctggccgaattgttcgagcggtacggacgttcc
cgaccgtcgatgatcgccggctgggccgacggggacgacctcgacggcgcgggtgctccg
ttgcgcgacgacctcgcctggcaggcggggttttggcgcgcggtgcgtgccgagatcggg
cagccgcatccggcggaggtcctcggcgaggtgtgtgagcgcctgcgctccgatcccggc
gtcgccgaccttcccggccggttgtccgtgttcggccccacgcggatcaccgagtcgttc
cggaacatcatctccgcggtgagcgcgcaccacgatgtccacctgttcgtcccgcacgcg
agtccccgtctgtgggaggaactccgagccgtcggcggaggagtgtccgcggcgacctcg
acggtgggtgtcccgccccggcggcgtgggcgcccggtacccgaactccggaatccgttg
ctggccgggctgtcccgcgatctccaggaactgcaattgcgtctgggggatgtcgtcgac
cgggacgtccaccatccgccggccaccccgctgcccgacacgctgctcggcgccctgcag
gcgggtatccgcgacgacgcaggggcccgcgacgacaccggagtgtccccgcctgccgaa
tgcgccgacgacgggtcggtcgaggtccacgcgtgccacggtccggaacggcagatcgag
gtgctccgggaccgactgctgcacctcttcgccgacgacccgaccctcgaaccgcgtgac
gtcctgatcatgtgccccgacgtggagaccttcgcgcccctcatccgaggtgccttcggg
caggccggattgccgcatcccgctttcgatctgcgcgtgcgcctcgccgaccgcggcgtg
cgtcaggtgaacccggtcatcgacaccgtcgtcggcgtcgtcgaactcgcggccggtcgg
gtgaccgcgggcgacgtcctcgatctgctcggggccgaacccgtccggacgcgtttcgcg
atgaccgacgacgacctggccctggtccgggaatggctgggccacagcaatgtccgctgg
gggctcggaaccgcggaacgtgcgcggttcggtctcgaacgtttccggcagggcaccttc
gacgcgggtctcgaccgcatcgccctcggtgtggtcgccgaggagaccgacgacgaatgg
ctcggcaccgccctgccactcgccggtgtggagagtaccggtatcgacctcgtcggccgg
ctcgacgaattcctcgaccggctcggccgagtcctcgcggacctgaccacgaccgcgccc
gcccaccgttgggccgagaccctcgtcgaggccgtcggatcgctcaccgcgaccgctccc
gccgacgattggcaacgagcacaggccatccggatgctcgaggacgccttcggcaccacc
gaggaggtcctgcgtctcgccgacgtgcgtgacctgttgtcggccctgatcgccgggcga
cccacgcgatccaatttccggaccggtgagctcaccgtatgcaccatggtgccgatgcgt
tcggtgccccaccgggtcatcgtgctgctcggcatcgacgccgaggtcttcccgcgcgtg
cagcgtatcgacggggacgacgtgctcggtgtcgatccgctggtgggcgaacgcaatccg
cgcgacgaggaccgccagtgcttcctcgacgcgatcggtgcggcgcaggacaacctgctc
gtcttctacagcggagccgacccggtgtcgggccggcacatcccgcccgccgtggtggtc
agcgaactgatcgacaccgtcgacggtctcaccggttcggaccggccgacgatcgtccgg
cggcactcactgcacggcttcgacgcccgcaacttcgtggacgggggtgttcgcggtatc
gccggaccgttcagccacgacgcctcgcttctggccggggcgacggccctgcgcggaccg
gccgatccggtcgtcccgtccgcccgggagatcctccccgcacccgagccgacccttgaa
ctcgccgacatcgacctcgcgtcgctcatcgacttccacgtcgatccgatcaccgccttc
gtccggcaacgcctgggcgcccggatacccgacgacgagacacctcacgacgaccagctc
gacgtcgaactcgacccgctcgacaagtgggggatcggcgaccgtttcctcacccggatg
ctggccggggtttccatcgtggactgtgaagctgctgaactgcgccgtgggacgctgccg
cccttcgccttcggtacccgggagctggcggccatctcgcgagcggtcacgcggctgcac
ggcgtcgtggcgccactgcgtccgggatcgccggaaaccctcgacatcctcgtgacactg
cccgacggacggcgcgtgcacggcaccgtcggcgaggtgttcaccgccgacgacggacag
gcccggctggtccgcgcgacgtactcgcgcctcaaggcgaaacagcaactgagcgcctgg
atcacgctgctcgcggtcgcggcggccgcgacccagggcaacgccggcgcggggaaggtc
gggtccgcggtgtccgtcggtcgcgccgcccgtgggggtggaaccaccacgctcaccctt
cgacgcccggaggatccggtgccgctcctcgaccagctcgtccgcttacgggacgaaggt
ctgcgccgtccgctgccgttgccgctggaacccgcgttcacgttcgtcgacaacgacggt
cccggtcgccggagccactgggccctcaacagcgcgcgcaaggtgttcgacgacaccttc
ggtccccgccacgatcgctacctcaaactggccttcggcggcgacgtcctgaccgacgtc
gagttcgacgccctgctcgaggagcgggcaccgggcgaccgcgccctcggcggggtggaa
ttggccgtggcagaggacgagccgctgttcagcggactcgcccgggcggtgtgggtcccc
gtcggacagcaccgggagggctcatga
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