Gracilinanus agilis (agile gracile opossum): 123246183
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Entry
123246183 CDS
T07702
Symbol
COL1A1
Name
(RefSeq) collagen alpha-1(I) chain
KO
K06236
collagen type I alpha
Organism
gas
Gracilinanus agilis (agile gracile opossum)
Pathway
gas04151
PI3K-Akt signaling pathway
gas04510
Focal adhesion
gas04512
ECM-receptor interaction
gas04611
Platelet activation
gas04820
Cytoskeleton in muscle cells
gas04926
Relaxin signaling pathway
gas04933
AGE-RAGE signaling pathway in diabetic complications
gas04974
Protein digestion and absorption
gas05146
Amoebiasis
gas05165
Human papillomavirus infection
gas05205
Proteoglycans in cancer
gas05415
Diabetic cardiomyopathy
Brite
KEGG Orthology (KO) [BR:
gas00001
]
09130 Environmental Information Processing
09132 Signal transduction
04151 PI3K-Akt signaling pathway
123246183 (COL1A1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
123246183 (COL1A1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
123246183 (COL1A1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
123246183 (COL1A1)
09150 Organismal Systems
09151 Immune system
04611 Platelet activation
123246183 (COL1A1)
09152 Endocrine system
04926 Relaxin signaling pathway
123246183 (COL1A1)
09154 Digestive system
04974 Protein digestion and absorption
123246183 (COL1A1)
09160 Human Diseases
09161 Cancer: overview
05205 Proteoglycans in cancer
123246183 (COL1A1)
09172 Infectious disease: viral
05165 Human papillomavirus infection
123246183 (COL1A1)
09174 Infectious disease: parasitic
05146 Amoebiasis
123246183 (COL1A1)
09166 Cardiovascular disease
05415 Diabetic cardiomyopathy
123246183 (COL1A1)
09167 Endocrine and metabolic disease
04933 AGE-RAGE signaling pathway in diabetic complications
123246183 (COL1A1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
gas00536
]
123246183 (COL1A1)
Glycosaminoglycan binding proteins [BR:
gas00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
123246183 (COL1A1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
IL8
Motif
Other DBs
NCBI-GeneID:
123246183
NCBI-ProteinID:
XP_044531054
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Position
4:complement(199033941..199095044)
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AA seq
1412 aa
AA seq
DB search
MGPDSLDWCQVRTSAKVHMLQLDRNESALPELMGEDKGGRGGPQHAVFSVPASPSSPGEI
GVQGPKGDTGPRGERGLPGLPGKDGNPGKPGLPGLPGPPGLPGLGGNYASQMSYGYDEKS
GGGMSVPGPMGPSGPRGLPGPPGSPGPQGFQGPPGEPGEPGASGPMGPRGPAGPPGKNGD
DGEAGKPGRPGERGPPGPQGARGLPGTAGLPGMKGHRGFSGLDGAKGDSGPAGPKGEPGS
PGENGAPGQMGPRGLPGERGRPGPPGPAGARGNDGATGAAGPPGPTGPAGPPGFPGAVGA
KGEAGPQGSRGSEGPQGVRGEPGPPGPAGAAGPSGNPGADGQPGAKGANGAPGIAGAPGF
PGARGPSGPQGPSGAPGPKGNSGEPGAPGNKGDPGAKGEPGPVGVQGPPGPAGEEGKRGS
RGEPGPSGLPGPAGERGGPGSRGFPGADGVAGPKGAPGERGAPGPAGPKGSPGEAGRPGE
AGLPGAKGLTGSPGSPGPDGKTGPPGPAGQDGRPGPPGPPGARGQAGVMGFPGPKGAAGE
PGKAGERGVPGPPGAVGAAGKDGEAGAQGPPGPAGPAGERGEQGPAGSPGFQGLPGPAGP
PGEAGKPGEQGVPGDAGAPGPSGARGERGFPGERGVQGPPGPQGPRGANGAPGNDGAKGD
AGAPGAPGGQGPPGLQGMPGERGAAGLPGAKGDRGDAGPKGADGAAGKDGVRGLTGPIGP
PGPAGPSGDKGESGPSGPVGPTGARGAPGERGEPGPPGPAGFAGPPGADGQPGAKGEPGD
AGAKGDAGPPGPAGPTGAPGPAGNVGAPGPKGARGSAGPPGATGFPGAAGRVGPPGPSGN
AGPPGPPGPAGKEGGKGPRGETGPIGRPGEVGPPGPPGPSGEKGSPGADGPAGAPGTPGP
QGIAGQRGVVGLPGQRGERGFPGLPGPSGEPGKQGPSGVSGERGPPGPAGPPGLAGPPGE
SGREGSPGAEGSPGRDGSPGPKGDRGETGPAGPPGAPGAPGAPGPVGPAGKSGDRGETGP
AGPAGPVGPTGARGPSGPQGPRGDKGETGEQGDRGMKGHRGFSGLQGPPGPPGSPGEQGP
SGASGPAGPRGPPGSAGAAGKDGLNGLPGPIGPPGPRGRTGDAGPAGPAGPPGPPGPPGP
PSGGFDFSFLPQPPQEKAHDSGRYYRADDANVRDRDLEVDTTLKSLTQQIENIRSPEGTR
KNPARTCRDLRMCHSDWKSGEYWIDPNQGCNLDAIKVFCNMETGETCVYPTQPNVPLKNW
YINKNPKDKKHIWFGESMTDGFQFEYGGEGSDPADVAIQMTFLRLMSTEASQNITYHCKN
SVAYMDQQTGNLKKALLLQGSNEIEIRAEGNSRFTYGVTEDGCTSHTGNWGKTVIEYKTT
KTSRLPIIDVAPMDIGAPNQEFGFDVGPVCFL
NT seq
4239 nt
NT seq
+upstream
nt +downstream
nt
atggggcccgacagtttggactggtgtcaagtgcgaaccagtgccaaagtccacatgtta
cagctcgataggaatgagagcgctctccctgagctcatgggggaggacaagggagggaga
ggggggcctcagcacgccgtgttctcagtgccggcttcaccatcctctcccggagaaata
ggagtccagggtcccaaaggagatactgggcctcggggtgaaaggggactcccaggccta
cctggaaaagatggcaacccaggaaagcctggtcttcccggcctccctggtccccctggt
ctccctggtcttggaggaaactatgcttcccagatgtcttacggctatgatgagaaatca
ggtggtggcatgtctgttcctggacccatgggtccctctggtcctcgtggtctccctggt
ccccctggctccccaggtccccaaggtttccaaggtccccctggtgaacctggcgagcct
ggagcttcaggtcccatgggtccccgaggccctgcaggtccccctggcaagaacggagat
gatggtgaagctggcaaacctggtcgtcccggtgaacgtggtcctcctggtcctcagggt
gctcgaggtctgcccggaactgctggtctccctggcatgaagggacacaggggtttcagt
ggtttggatggtgccaagggagacagtggtcccgctggtcccaagggtgagcctggtagc
cctggtgaaaacggagctcccggacaaatgggccctcgtggtcttcctggtgagagaggc
cgccctggacctcctggcccagctggtgctcgtggtaacgatggcgcaacaggtgctgct
ggacccccaggtcccaccggtcctgctggtccccctggtttccctggtgctgttggtgct
aagggtgaagctggtccccaaggatcccgaggctctgaaggtccccagggtgtccgtgga
gagcctggtccccctggccctgctggtgctgctggcccatctggtaaccctggtgctgat
ggacaacctggtgccaaaggtgccaatggtgctcctggaattgctggtgctcctggcttc
cccggtgcccgtggtccttctggacctcagggtcctagtggtgctcctggtcccaagggt
aatagcggtgaacctggtgctcccggtaacaaaggtgaccccggtgccaagggagagccc
ggccccgttggtgttcaaggtcccccaggccctgctggggaggaaggcaagagaggatcc
cgtggtgaacctggaccttctggtctgcccggcccagctggtgaacgaggtggtcctgga
agccgtggtttccctggtgctgatggtgttgctggtcctaagggtgcccctggtgaacgt
ggtgcccctggccctgctggtcccaaaggatctcctggtgaagctggtcgccctggtgag
gctggtctgcccggtgccaagggtctgactggaagccctggaagccctggtcctgatggc
aaaactggtcctcctggtcccgctggtcaagatggtcgcccaggacctccaggccctcct
ggtgcccgtggtcaagctggtgtcatgggattccctggacccaagggtgctgctggagaa
cctggcaaggctggagagagaggtgtccctggaccccctggtgctgtgggtgctgctgga
aaagatggagaagctggtgctcaaggtccccccggtcctgctggtcctgctggtgagaga
ggtgaacagggtcctgctggctcccctggattccagggtctccctggccctgctggccca
cctggagaagctggcaagcctggtgaacagggtgttcctggagatgctggtgcccctggc
ccctctggcgcaagaggtgagagaggtttccctggagaacgtggtgtgcaaggtcctcct
ggccctcagggtccccgtggtgccaatggtgctcccggcaatgatggtgctaagggtgat
gctggtgctcctggtgcccctggtggccaagggccccctggtctgcaaggaatgcctggt
gaacgtggtgcagctggccttcccggtgccaagggtgacaggggtgatgctggtcccaaa
ggcgctgatggtgctgctggcaaagatggtgtacgtggcctgactggtcccattggtcct
cctggccctgctggtccttctggtgacaagggtgaatctggtcccagcggccctgttggt
cccactggagctcgtggtgcccctggagaacgtggtgagcctggcccccctggtcctgct
ggctttgctggtccccctggtgctgatggccaacccggtgctaaaggtgaacctggtgat
gctggtgctaaaggtgatgctggtccccctggccctgctggacccactggtgcccctggc
cctgctggtaatgttggtgctcctggacccaaaggtgcccgtggcagcgcaggtcctcct
ggtgctactggtttccctggtgctgctggaagagttggtccccctggcccctctggtaat
gctggaccccctggacctcctggccctgctggcaaagaaggcggcaaaggcccccgtggt
gagactggccccattggacgtcccggtgaagttggacctcccggtccccctggcccaagt
ggagagaagggatctcctggtgctgatggccctgctggtgctcctggtactcctggacct
caaggtattgctggacagcgtggtgtggtgggtctgcctggacagagaggagaaagaggt
ttcccgggtcttcctggtccctctggtgagcccggaaaacaaggtccttctggagtaagt
ggcgaacgcggcccccctggccctgctggcccccctggattggctggaccccctggtgaa
tctggacgcgagggctctcctggtgctgaaggctcccctggtcgtgatggctctccaggc
cccaagggtgaccgtggtgagactggtcctgctggcccccctggtgctcctggtgccccc
ggcgctcctggccctgtgggtcccgctggaaaatctggagatcgtggtgagactggtccc
gctggtcctgctggtcccgttggtcccactggtgcccgtggaccttctggaccccaaggc
ccccgtggtgacaagggtgagacaggtgaacagggagacagaggcatgaagggtcacaga
ggcttctctggtctccagggtccccctggtcctcctggttctcctggtgaacaaggtcct
tctggagcttccggtcccgctggcccccgaggtccccctggctctgctggtgctgctgga
aaagatggactcaatggtcttcctggccccatcggtccccctggtccccgtggtcgtact
ggagatgctggtcctgctggtcccgctggacctcctggaccccctggtcctcctggtccc
cccagcggtggattcgacttcagcttcctgccccagccaccccaggagaaggctcacgac
tctggccgctattaccgagctgatgatgctaacgtgcgtgaccgtgaccttgaagtggac
accaccctcaagagcctgacccagcagattgagaacatccgaagccctgagggaactcgc
aagaaccctgcccgcacctgcagagacctcaggatgtgccactcagactggaagagcgga
gagtactggattgatcccaaccaaggctgcaacctggatgccatcaaggtcttctgcaac
atggagactggagaaacctgtgtgtaccccacccaacctaacgtgcccctgaagaactgg
tacattaacaagaaccccaaggacaagaagcacatctggtttggcgagagcatgaccgat
ggattccagttcgagtatggtggcgagggctccgaccctgctgatgtggctatccagatg
accttccttcgcctgatgtccactgaggcctctcagaacatcacctatcactgcaagaac
agcgtggcctacatggaccagcagaccggcaacctcaagaaggctctgcttctccaaggc
tccaatgaaattgagatccgtgctgaaggcaacagccgattcacctatggagtcactgaa
gatggctgcacgagtcacactggaaactggggcaagacagtcatcgaatacaagaccacc
aaaacctcccgcctgcccatcatcgatgtggcccccatggacattggcgcccccaaccag
gaatttggcttcgacgtgggtcccgtctgcttcctgtaa
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