Gasterosteus aculeatus (three-spined stickleback): 120814961
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Entry
120814961 CDS
T07457
Symbol
cacna1fb
Name
(RefSeq) calcium channel, voltage-dependent, L type, alpha 1F subunit isoform X1
KO
K04853
voltage-dependent calcium channel L type alpha-1F
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat04010
MAPK signaling pathway
gat04020
Calcium signaling pathway
gat04260
Cardiac muscle contraction
gat04261
Adrenergic signaling in cardiomyocytes
gat04270
Vascular smooth muscle contraction
gat04912
GnRH signaling pathway
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
120814961 (cacna1fb)
04020 Calcium signaling pathway
120814961 (cacna1fb)
09150 Organismal Systems
09152 Endocrine system
04912 GnRH signaling pathway
120814961 (cacna1fb)
09153 Circulatory system
04260 Cardiac muscle contraction
120814961 (cacna1fb)
04261 Adrenergic signaling in cardiomyocytes
120814961 (cacna1fb)
04270 Vascular smooth muscle contraction
120814961 (cacna1fb)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
gat04040
]
120814961 (cacna1fb)
Ion channels [BR:
gat04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
120814961 (cacna1fb)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
CAC1F_C
Ca_chan_IQ
GPHH
PKD_channel
Motif
Other DBs
NCBI-GeneID:
120814961
NCBI-ProteinID:
XP_040025968
LinkDB
All DBs
Position
Unknown
AA seq
1904 aa
AA seq
DB search
MHPSSYIRNGWNLLDFVIVIVGLFSVVLETMTHKSGEVATTHHVPGKPGGLDVKALRAFR
VLRPLRLVSGVPSLQIVLNSIMKAMVPLLHIALLVLFVIIIYAIIGLELFIGRMHRTCYY
KESDNYVEDDPVPCAFLGHGRQCSINGTECRGRWDGPNGGITNFDNFFFAMLTVFQCITM
EGWTDVLYWMNDAIGFELPWVYFVSLVIFGSFFVLNLVLGVLSGEFSKEREKAKARGDFQ
KLREKQQMEEDLCGYMDWITQAEDMDELDEEGNPRPSLGDLSDKKRGKFGWFSHSTETHA
SLPASETASENTENIDEEHTNCCQNCCSRIMKISCCRTLRRWNRVCRRNCRTAVKSVTFY
WLVLLLVFLNTSLSASEHYNQPDWLTEVQDIANKVLLSLFTVEMLLKMYSLGLAHYFVAF
FNRFDCFVVCGGIVETILVELGIMPPLGISVLRCVRLLRIFKVTRHWTALSNLVASLLNS
MKSIASLLLLLFLFLIIFALLGMQLFGGKFNFDETQTKRSTFDAFPQALLTCFQILTGED
WNMVMYDGIMAYGGPVFPGMIVCVYFVILFICGNYILLNVFLAIAVDNLAGGDGDKEKNK
KTEGAKEAEGREGGDGGEEKEEEEEVKVDIDEDTEYEEEEEPPEGADDAGVQLKMADLTP
PKEKVLPIPEGSAFFCLSKTNPIRVFCHTLIHHHIFTNLILVFIILSSCSLAAEDPIRAH
SFRNNILGYADYAFTSIFTVEILLKVRKLFHARGKDSLGSSSLDLVISLGQMAVHGAFLH
QGSFCRNWFNLLDLLVVSVSLVSFFLHSSAISVVKILRVLRVLRPLRAINRAKGLKHVVQ
CVFVAIKTIGNIMIVTTLLQFMFACIGVQLFKGKFYRCTDEAKHTPDQCKGTFVVYKDGD
VNHPMVRERIWLNSDFNFDNVLMGMMALFTVSTFEGWPALLYKAIDANGENSGPIYNYRV
EISIFFIVYIIIIAFFMMNIFVGFVIITFREQGEQEYKNCELDKNQRQCVEFALKAQPLK
LYIPKNPVQFKFWSIINSTGFEYVMFVLILLNTVTLAVQHYEQSKKFSHIMDILNMVFTG
LFTAEMLLKLLALRLRHYFVDAWNSFDALIVVGSVVDIVVTEFSSGEDSSRVSITFFRLF
RVMRLVKLLSKGEGIRTLLWTFIKSLQALPYVALLIAMIFFIYAVIGMQTFGKVAMQDLT
QINRNNNFQTFPQAVLLLFRCATGEAWQEIMLASLPGKRCDPESDYEPGEEFSCGSNFAI
VYFISFFMLCAFLIINLFVAVIMDNFDYLTRDWSILGPHHLDEFKRIWSEYDPEAKGRIK
HLDVVALLRRIQPPLGFGKLCPHRVACKRLVAMNMPLNADGMVTFNATLFALVRTALKIK
TEGNPDQENEELRGIIKKIWKRMKPKLLDEVIPPHEEEEVTVGKFYATFLIQDYFRKFRK
RKEKGDLPGESDTTNPSAVQLCKAGLKTLQDLGPEMRLALNEDLEDDDEVAIEDEELQEE
MYQGDSVGLERERRGSALATPTGPCGLAVEGGVSNGGLIHRVGSVIKTPNCGEHDQRRRR
GDADRCFVNLHHQRRRNGEKKRHYSRRDSRDRSWRNGDVETYGEQGYYSREEDNDSISSR
DRHCPDEPPQYRDHYDGHAPFSDGNYGNGYSEAMRTTRRRLLPATPTGRKPSFNIQCLRR
QGSSDDLPIPGTYHPTSPPRRTRTQTFSSYESRHSSGRSSAASSASWANPCPRRGRLLYA
PLILVEEEGSPPWGGGGRGGQEGKTGGAERGVNVTGAAPAWYGGPAGTSAPPPYKAYTTL
RVPSQLGAQLTEKRGSADSLVEAVLISEGLGLYARDPKFVAFAKREIADACHMTVDEMES
AASDLLGSPALLADPAALYSDEEPIRTGHDEDELADEMTCVTSF
NT seq
5715 nt
NT seq
+upstream
nt +downstream
nt
atgcatcccagttcctacatccgcaacggatggaacctcctcgactttgtcatcgtcatc
gtcggtttgttcagcgtcgtcttggagacgatgactcataaatccggcgaggtggcgaca
actcatcacgtgccaggaaaacctggaggtctggatgtgaaagctctgagagccttcagg
gtcctaaggcccctcagattagtgtctggggtcccaagtctgcagatcgtgctgaactcc
atcatgaaggcgatggttcctcttctccacatcgccctgctggtcctcttcgtcatcatc
atctatgccatcattggcctggagctcttcattggccgcatgcaccggacctgctactac
aaagagtcagataactacgtggaggacgacccggtcccgtgtgccttcctcggtcacggc
cgtcagtgcagcattaacgggacggagtgccggggccggtgggatgggcccaacggtgga
atcaccaacttcgacaacttcttctttgccatgttgacggtgttccagtgcattacaatg
gagggctggaccgacgttctctactggatgaacgacgcaatcggcttcgagctgccgtgg
gtttattttgtcagcctggtgattttcggatccttctttgtcctcaacctggttctggga
gtcctcagtggagagttcagtaaggagagggagaaggcaaaggctcgtggagacttccag
aagctgagggagaagcagcagatggaggaggacctgtgtggatacatggactggatcact
caggccgaggacatggacgagctggacgaagaaggcaacccgcgtccgtctctgggagat
ctgtccgataagaagcgagggaagtttggatggttcagtcactccactgaaacacacgct
agtcttcctgcgagtgaaactgcatctgaaaacacagaaaacattgatgaagagcacacc
aactgctgccagaactgctgctctcggatcatgaagatcagctgctgtcggacgctgcgt
cgctggaacagggtctgtcgcaggaactgtcgcaccgccgtcaagtctgtgacgttctat
tggttggttctgctgctcgtcttcctcaacacctccctcagcgcgtcggaacactacaac
caacccgattggctgacggaggttcaagacatcgccaacaaggtgctgctgtcccttttc
accgtggagatgctgctgaagatgtacagcctgggcctagcccactactttgtggccttc
ttcaaccgctttgactgcttcgtagtgtgcggcggcattgtggagaccatcctggtcgag
ctaggaatcatgccgccgctgggcatctccgtactgcgctgtgttcgcctgctgaggatc
ttcaaggtcacacggcactggacggccctctccaacctggtggcatcgctgttgaactcc
atgaagtccatcgcctcgctgctgctgctgctcttcctcttcctcatcatttttgctctg
ctcggcatgcagctgttcgggggaaagttcaactttgacgagacgcagaccaagcgcagc
accttcgacgcctttccccaggcgctgctcacctgcttccagatcctaaccggggaggac
tggaacatggtgatgtatgacggcatcatggcgtacggtggcccagtgtttccagggatg
atcgtgtgcgtttactttgtcatcctcttcatctgcggtaactacatcctgctgaacgtc
ttcttggccatcgccgtggacaacctagccggaggagacggagacaaagagaaaaataag
aagacggaaggagccaaggaggctgagggcagagagggaggagatggaggagaagaaaaa
gaagaagaagaggaagtaaaggtggacatcgacgaagacacagagtacgaggaggaggag
gagcctcctgaaggagcagacgatgcaggagtccagttaaagatggccgacctcactcct
cctaaagagaaggttcttcccattccagaaggcagtgcgttcttctgcttgagcaagaca
aaccccatccgtgtgttctgccacactctgatccaccaccacatcttcaccaacctcatc
ctcgtcttcatcatcctcagcagctgctcattggctgccgaggatccaatcagagcccac
tccttccggaacaacattctgggctatgcggactacgccttcacctccatctttacagtg
gagattctgctaaaggtgagaaagctcttccacgccagaggaaaggactctcttggctct
tcttctcttgatctcgttatctctctgggacagatggcagtgcatggagcatttcttcac
cagggctccttctgcaggaactggttcaacctgctggacctgctggtggtcagtgtgtcg
ctggtctccttcttcctccactccagtgccatctctgtggtgaagatcctccgagtcctc
cgagtattgagacctctgagggccatcaacagagccaaaggcctaaaacacgtggtccag
tgtgtgtttgtcgccataaagacaataggaaacatcatgatcgttacgactcttcttcag
ttcatgttcgcctgcatcggagtccagctcttcaagggtaaattctatcgctgcacagat
gaagccaaacacacacctgatcagtgcaaagggaccttcgtggtctacaaagacggagac
gtgaaccaccccatggtgagagagaggatctggctgaacagtgactttaacttcgacaac
gtgctaatggggatgatggcgcttttcaccgtctccaccttcgagggctggcccgcgctg
ctctacaaggccatcgacgctaacggggagaactcgggccccatctacaactaccgggtt
gagatctccatcttcttcatcgtctacatcatcatcattgccttcttcatgatgaacatc
tttgtgggctttgtcatcatcaccttcagggagcagggggagcaggagtacaagaactgt
gagctggacaagaaccagcgtcagtgtgtggagttcgcactgaaggctcagcctctgaag
ctctacatcccaaagaacccagttcagttcaagttctggtccatcatcaactccaccggg
ttcgagtatgtgatgtttgtgctcatccttcttaacaccgtcacgctggctgttcagcac
tacgagcagtctaagaagttcagccatataatggacatcctcaacatggtcttcaccgga
ctcttcacagccgagatgctgcttaagctgctggccctcaggctcaggcattactttgtg
gacgcgtggaactccttcgacgctctgatcgtcgtcggcagtgtcgttgatattgtggtc
accgaatttagtagtggggaggacagctctcgggtgtcgatcaccttcttccgtctattt
cgagtgatgcgattggtcaagctgctgagtaaaggggagggtattcgtactctattgtgg
actttcatcaaatcactgcaggctttgccgtatgtagctctgctcatcgccatgatcttc
ttcatctacgccgttatcgggatgcagacctttgggaaagtagcaatgcaggatctcact
cagatcaacagaaacaacaatttccaaacatttcctcaggctgtcctcctcctcttcagg
tgtgcgacaggtgaggcgtggcaggagatcatgctggccagtcttccaggtaaacgctgt
gacccagagtctgactacgaaccaggtgaagagttcagctgtggaagcaatttcgctatt
gtgtacttcatcagcttctttatgctgtgtgctttcctgatcattaacctttttgtcgcc
gtcatcatggacaactttgactatctgacacgtgattggtcgattctgggaccgcatcac
ctggacgagttcaagcggatctggtctgaatacgacccggaggccaaaggtcgtatcaaa
catctggacgtggtggctctgctgaggaggattcagcctcctctgggttttgggaagctt
tgtcctcacagagtggcttgtaagcgtctggtagcaatgaacatgcctttgaatgcagat
gggatggtcacctttaacgctacgcttttcgctctggttcgaacggcactgaagataaag
actgaaggtaaccctgaccaggagaacgaggagctgaggggaatcatcaagaagatctgg
aagagaatgaaaccaaagctactagatgaagtaataccaccacacgaagaggaggaagtc
acagtcggcaagttttatgcaacattcctgattcaggattacttcagaaagttcaggaag
aggaaagagaagggagacctacccggagaatctgacaccaccaacccatcggctgttcag
ctgtgtaaagccggactaaagactcttcaggatctgggtccagagatgcgtttggctctg
aacgaggacctggaggacgatgacgaggttgcgattgaggacgaggagctacaggaggag
atgtaccaaggtgacagcgtcggactggagcgagaacgcagaggttctgcattggccacg
cccactggtccctgtggtctggcggtagagggtggggtctctaacggcggtctgatccac
cgggtcggctccgtcattaagacaccgaactgtggcgagcatgaccaacgccgtcgccgt
ggagacgcagacaggtgttttgtcaaccttcatcatcagaggcgaaggaacggagagaag
aagagacactacagcaggagggactccagggaccgatcctggaggaacggagacgtggag
acgtacggagagcagggctactacagcagggaggaggacaacgacagcatcagctccaga
gacagacattgccctgacgaacctcctcagtacagagaccactatgatggccacgcaccc
ttctctgatggtaactatggtaacggttacagcgaggccatgaggacaacccggagacgc
ctacttcctgccacgcccacaggtcggaagccatcattcaacatccagtgcctgaggaga
caaggcagcagtgacgacctcccgatccccgggacataccaccccacctcccccccccgc
cgcacacgaacacagacattcagcagttatgagtctcgtcactcatccggtcgctcctct
gcagcttcctcggcctcctgggcaaacccgtgtcctcgccgcggtcgtctcctatacgct
cctctcattctggtggaagaggagggcagcccaccatggggcggaggaggacgaggagga
caagaggggaagacgggaggtgcagaaagaggtgtcaatgtgacaggtgcagcaccagcc
tggtacggaggccctgcagggacatcagctccacccccctacaaagcctacaccaccctc
agagttccctcccagctcggtgctcagctgacagaaaagcgaggatcggcggacagcctg
gtggaggcggttctcatatctgaggggcttggcctctacgcccgggatccgaagttcgtg
gcattcgccaagcgtgagattgccgatgcgtgtcacatgacggtggacgaaatggagtcg
gcggccagtgacctgctgggcagcccggctctgctcgccgaccctgcggcactctacagc
gacgaggagccaatcaggacgggccatgacgaggatgagctggccgatgaaatgacctgc
gtgacgtcgttctga
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integrated database retrieval system
