Gasterosteus aculeatus (three-spined stickleback): 120816310
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Entry
120816310 CDS
T07457
Name
(RefSeq) collagen alpha-1(XI) chain-like isoform X1
KO
K19721
collagen type V/XI/XXIV/XXVII, alpha
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
120816310
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
gat00536
]
120816310
Glycosaminoglycan binding proteins [BR:
gat00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120816310
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
Laminin_G_2
Laminin_G_3
Laminin_G_1
Motif
Other DBs
NCBI-GeneID:
120816310
NCBI-ProteinID:
XP_040027779
LinkDB
All DBs
Position
III:complement(11544436..11607476)
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AA seq
1820 aa
AA seq
DB search
MEMQRWTTRWKTKRLLWDSTPIAVVTLCLILQAAQVRAVEQVDVLKALDFQSAPEGVQKT
IGFCKVRRGSKPDIAYRVGKQAQISAPTKQLFPGGVFPEDFSILFTIKPKAGLQSFLLSV
YNQQGIQQLGVEVGRAPVFLYEDQHGKPPPEEYPLFRSINLADGKWHRVAISVEKKSVTI
FVDCKKKVTRPLARSDQAVINTEGITVFGTRILDEEVFEGDIQQLLIVADPRAAHDYCEH
YSPDCETPNHHDTPQAQQPEEEYTNYEYGDFYDYKEGELTTDAPPTEVAKTETNAGGDYY
TGEYDYSTVDGSQPETPTEKEKGQTYEGEIVDDYITGVEQVGVDSTVAPETAAPVDPHEE
VDPATDVYEFKEYDLKEYDNKENVEKPYEYGDYGDYGTTDAKPSSPTDEEDFGPGVPAET
DFRESAVSGGSSYLGEKGEKGEPAIIEPGMFFEGSPGVPGQAGLPGTPGLQGPPGPAGDH
GERGPPGRAGIPGSDGIPGPPGTVLMLPFRAGGESHKGPVVSAQEAQAQAILSQARLTMR
GPPGPAGMTGRSGPVGGPGSAGLKGDSGDSGPQGPRGLQGPNGPPGKAGKRGRNGADGAR
GMPGEAGSKGDRGFDGLPGLPGEKGHRGEHGSSGPPGSPGEDGPRGEDGQVGQRGVAGES
GPRGLLGPRGSPGPGGQRGLPGIDGQAGPKGNLGPQGEPGPPGQQGIPGPHGLVGPQGPI
GPPGEKGPQGKQGLGGLPGADGPPGHPGKEGPAGEKGASGLPGAMGSIGYPGPRGVKGAE
GIRGLKGGKGEKGEDGFPGFKGDMGLKGDKGENGVLGPRGEDGPEGPKGKSGPNGEAGPL
GSAGEKGKLGVPGLPGYPGRQGSKGSNGFPGFPGANGEKGARGIAGKAGPRGQRGPTGAR
GGRGARGPTGKPGAKGTSGNDGPGGPPGERGPQGPQGPVGFPGPKGPNGPPGKDGLPGHP
GQRGETGFQGKTGPPGPGGVVGPQGPTGETGPSGERGHPGSPGPPGEQGLPGAAGKEGGK
GDPGSQGPGGKAGPSGLRGFQGTRGLPGATGPAGLKGGEGPQGPSGPIGSTGERGAAGPG
GPIGLTGRNGPQGPPGPAGEKGGPGEKGPVGPAGRDGIQGPVGLPGPGGPQGPPGEDGDK
GEVGGPGQKGSKGDKGELGPPGSSGLQGVLGAPGPAGTDGESGPRGQQGMFGQKGDEGAR
GFPGLPGPLGLQGMPGPPGEKGENGDVGAMGPPGPPGPRGPQGSSGANGAPGPTGGIGAM
GGVGEKGETGEAGNPGPHGEPGTGGPRGETGEKGETGPPGAAGPAGARGPPGDDGPKGNP
GPVGFPGDHGPPGEPGAAGIDGLSGDKGDDGEAGQPGPPGPSGEAGVPGPPGKRGPIGSA
GQEGRQGEKGSKGEAGAEGPVGKTGPVGPQGPAGKSGAEGLRGIPGPVGEQGLPGASGQD
GPPGPIGPPGLLGIKGDSGWKGEKGHPGLIGLIGPPGEFGEKGDRGLPGPQGTAGGKGDA
GFGGSSGPVGPPGPPGISGPQGQKGSKGSSGSAGQKGDNGLIGPPGPPGPPGDLIQPLPI
QHRKSRRQAEMQGDEAMADYGVDGVGMEGMEDVFGSLNNLKQDIERMKFPMGTQDNPART
CNDLHLSQPDYPDGEYWIDPNQGCIGDSIKVFCNFTAGGETCIHPDKKSAGVRISNWPKE
LPGSWFSEFKRGKILNYVDMAENTINTVQMTFLKLLSSSARQNFTYICHQSVAWYDAKAD
NYDKALRFLGSNDEEISYDNNLFIKPLVDGCSLKQGYSKTVMEINTPRIDQLPIIDVMLN
DFGESNQRFGFELGPVCFLG
NT seq
5463 nt
NT seq
+upstream
nt +downstream
nt
atggagatgcaaaggtggaccaccaggtggaaaacgaaaaggttactatgggattcaacg
ccaatcgccgtggtcacgttatgtttaattctgcaagctgcccaggtcagagcagttgaa
caagtagatgtgctgaaggctctggacttccagagtgctcctgaaggtgtacagaaaaca
ataggcttctgcaaagtccggaggggatccaaacccgacatcgcttacagagtgggaaaa
caggctcagatcagcgctccaaccaaacagctcttcccaggaggagttttcccagaagat
ttctccatcctgtttaccatcaagccaaaggccggcctccagtccttcctgctgtccgtg
tacaaccagcagggcatccagcagctcggcgtggaggtgggccgcgccccggtcttcctt
tacgaggaccagcatggcaagcctcccccggaggagtaccccctgttccgctctatcaac
ctcgctgacggcaaatggcatcgcgtagctatcagcgtggaaaagaaaagtgtcaccatc
ttcgtggactgtaagaagaaggttaccaggcccctcgccagaagcgaccaggccgtcatc
aacacagaaggcattaccgtctttggcaccagaattctggatgaagaagtctttgagggc
gacatccagcagctgctgatagtggccgaccccagagcagcccatgattactgtgaacac
tacagccccgactgtgaaacccccaaccaccacgacaccccccaggctcagcaacctgag
gaagagtacactaactatgaatatggtgatttctatgactacaaagaaggcgagttaacc
actgatgctcccccaactgaagtagccaagaccgagacaaatgcaggtggagattactat
acgggtgaatatgactactccacagtggacggaagtcagcctgaaaccccaactgaaaag
gaaaaaggccagacctacgaaggggaaatcgtggatgattacatcactggcgtggagcag
gtcggggtggactccaccgttgctccggaaaccgctgccccggtggaccctcacgaagag
gtggatcccgccactgacgtgtacgagtttaaggaatacgacctgaaggaatatgacaac
aaagagaatgtggagaagccgtacgaatacggtgattatggcgactacggcaccacggat
gccaagccttcgtctccaacggacgaggaggactttggacctggtgttccagcggagacg
gacttcagagagagcgctgtgagtggaggttcaagttaccttggagaaaaaggagagaag
ggggaacctgccatcatcgaacctgggatgttttttgaaggatccccaggagtccccggc
caagcaggtcttccaggtaccccaggattgcagggtccaccaggtcccgcaggagatcat
ggtgagaggggtcctccagggcgagctggtattcctggttccgacggtattcccgggcct
ccaggtaccgttctgatgcttccattccgtgctggcggtgagtcacataagggacctgtg
gtttcagctcaggaagctcaggctcaggccatcctttctcaggcgaggctgaccatgaga
ggtcctccagggccggcgggcatgacagggagatctggtcctgtgggaggtccaggttct
gctggacttaaaggtgacagtggcgactccggacctcagggacccagaggacttcaaggt
ccaaatggtcccccagggaaagcagggaagaggggtcgcaatggagccgatggtgctcga
ggaatgccaggagaggcagggtccaagggggacagaggttttgacggcctccctggtctt
cctggagaaaaagggcatcgaggagaacacggttcgtcaggtcctccaggatctccggga
gaggatggccccagaggggaagatggccaggttggacagagaggtgtggctggagagagt
ggccctcgaggtttgctcggccccagagggtctccaggacctggaggacagcgtggtctc
cctggaattgatgggcaagctggtccaaagggaaacttgggtccacaaggagagccggga
ccaccagggcagcagggcattcctggtccacatggcctcgtcggtcctcaaggtccaatc
gggcctcctggtgaaaagggacctcaagggaaacaaggtctgggcggccttcctggtgct
gatggacctcctggtcacccaggaaaagaaggtcctgcaggcgagaaaggagcaagtggt
cttcctggtgctatggggtccatcggctaccctggtcctcgtggtgtgaaaggtgctgag
ggaattagaggccttaaaggtggcaaaggagaaaagggagaggatggattccctggcttc
aaaggggacatgggtctcaagggtgacaagggtgaaaacggcgtgctgggacccagagga
gaggacggccccgagggccccaagggcaagtcgggacccaacggcgaagcaggtcccttg
ggatcagctggagagaagggcaaactcggagtccccggattgcctgggtaccctggtcga
caaggctctaagggctccaacggcttccctggattccccggggcaaatggcgagaaggga
gcaaggggaatcgccggcaaagcaggacctcgagggcaacgtggtccaacgggggcacgt
ggtggccgtggtgccagaggaccaacaggaaagccaggtgcaaagggcacctcaggcaat
gatggaccagggggtccaccaggagagaggggacctcaaggaccacagggacccgttggt
ttccccggacctaaaggaccaaatggtccgccaggaaaggatgggctgcccggtcatcct
gggcagagaggagagacgggcttccaaggaaagacaggacccccaggacctggaggggtg
gttggaccacagggtccgactggagagacaggacccagcggagagcgaggacatccaggc
tctcctggtccacctggcgagcaaggtcttcccggagctgctggaaaagagggtggaaag
ggtgatccaggatctcagggccccggaggcaaggcaggaccttctggtttgagggggttc
caaggcacaagaggtctcccaggagccacgggtccagctggcttaaagggaggagagggg
cctcagggtccctccggccccatcggttctactggagagagaggcgctgctggccccgga
ggtcccattggtctgacaggacgcaatggcccccaaggaccacctggccctgctggagaa
aaaggaggccctggagagaaaggtcccgtcggtcctgccggccgtgatggcattcaaggc
cccgtcggcctccctggtcctggaggtcctcagggtccccctggagaggacggtgacaag
ggagaagttggtggacctggacagaagggaagcaaaggagacaagggtgaacttggtcca
ccaggctcgagcggtcttcagggtgtcctcggagctcctggtccagctggcactgatggt
gagtctggaccgaggggacagcagggtatgtttggccagaaaggagacgagggagccaga
ggattccccggtctaccaggaccactcggactgcagggaatgcccggccctcctggcgag
aagggagagaacggagacgttggagcgatgggtccaccaggtcctcctggccccagaggt
cctcaaggttcaagcggagccaatggtgctccaggtccgactggtggtattggtgcgatg
ggaggcgttggtgagaagggagaaaccggtgaagctggcaatccaggaccacacggagag
cctggtaccgggggacccagaggagagactggtgagaagggagaaactggaccacctgga
gctgctggacccgccggcgcccgcggaccccctggagatgacggacccaagggaaacccc
ggccccgttggcttcccaggagaccatggtccccccggagagcccggtgctgcaggtatt
gacggtttatcaggtgacaaaggagacgatggagaggctggccaaccaggtcctcctggt
ccatctggggaggctggagtaccaggacctccaggcaaaaggggtcctattggatcagca
ggtcaagaggggagacaaggagaaaaaggatcaaagggggaagctggtgctgaagggccc
gttgggaaaactggacctgtgggacctcaggggcctgctgggaagtctggtgctgaggga
ctgcgtggaattcctggccctgttggcgagcaaggactacctggtgcttctggtcaagac
ggccctcctggaccaataggcccccctggacttctcggcataaaaggtgactctggatgg
aagggagagaagggtcatccgggtcttatcggtctaattggaccacctggtgagtttgga
gagaagggagatcgaggattgcccggacctcagggtactgccgggggcaagggtgatgct
ggttttggtggctccagtggtcctgtcggccctcctggtcctcctggtatttctgggcct
caaggacagaaaggttcaaagggatcatctggttcagcgggtcagaagggagacaatgga
ctgattggaccacctggaccccctggcccacccggtgacctcatccagccgctgcccatc
cagcacagaaagagcaggcggcaggccgagatgcagggcgacgaggcgatggcagactac
ggcgtggatggtgtcggtatggagggaatggaggacgtcttcggatccctcaacaacctc
aaacaggacattgagcgcatgaagttccccatgggcacccaagataatccggccaggacg
tgcaacgacctgcacctcagccagccggactacccagacggtgaatactggatcgatcca
aaccagggctgtatcggagactccattaaagtcttctgtaacttcacagcaggcggagaa
acgtgcatccacccagataagaagtctgcaggagttagaatatccaactggcccaaggag
cttccgggttcatggttcagtgaattcaaacgtggtaaaattttgaactacgttgacatg
gcagaaaacaccatcaacacggtgcagatgaccttcctgaagctgctgagctcctcggca
cgccagaacttcacgtacatttgccaccagtcggtggcctggtacgacgccaaggcagac
aactacgacaaagccctgcgcttcctgggctccaatgatgaggagatctcctacgacaac
aatctcttcatcaagcctctggtggacggctgctcgctgaagcagggctattcaaagacg
gtgatggagatcaacaccccccgcatcgaccagttgcccatcattgacgtcatgctgaat
gactttggggaatctaaccagaggtttggcttcgagctcggccctgtctgtttcctcggc
tag
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