Gasterosteus aculeatus (three-spined stickleback): 120817224
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Entry
120817224 CDS
T07457
Symbol
syvn1
Name
(RefSeq) E3 ubiquitin-protein ligase synoviolin
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat04120
Ubiquitin mediated proteolysis
gat04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
120817224 (syvn1)
04120 Ubiquitin mediated proteolysis
120817224 (syvn1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
gat04121
]
120817224 (syvn1)
Enzymes [BR:
gat01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
120817224 (syvn1)
Ubiquitin system [BR:
gat04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
120817224 (syvn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_2
zf-C3HC4
zf-rbx1
zf-C3HC4_2
zf-RING_UBOX
zf-C3HC4_3
zf-RING_16
zf-RING_11
zf-RING_5
zf-ANAPC11
zf-RING-like
zf-HC5HC2H
zf-Nse
FANCL_C
Motif
Other DBs
NCBI-GeneID:
120817224
NCBI-ProteinID:
XP_040029118
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All DBs
Position
IV:16469673..16477391
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AA seq
620 aa
AA seq
DB search
MARAALVTATSLALTGAVVAHAYLLKHQFYPTVVYLTKSSPSMAVLYIQAFVLVFLLGKF
MRKVFFGQLRAAEMEHLIERSWYAVTETCLAFTVFRDDFSPRFVALFTLLLFLKCFHWLA
EDRVDFMERSPNISWIFHFRVLSLMGLLAVLDFLFVNHACHSIIIRGASVQLVFGFEYAI
LITMVLTTFIKYILHTVDLQSENPWDNKAVYMLYTELFTGFIKVLLYIAFMTIMIKVHTF
PLFAIRPMYLAMRQFKKAVTDAIMSRRAIRNMNTLYPDATPEDLQASDNVCIICREEMVT
GAKKLPCNHIFHSSCLRSWFQRQQTCPTCRMDVLRASNNNQAPAPAPAQAPAPAAPANAP
AAPPANVAPGMLPGFPPGIFPFWGPFPGVPPPPAAAAPGGADAPQSSTQAAGTSQATLSP
ADAAPPGSTMPGFPFSFPPPPFPTAPWLMPPPPPFVSSMPPPPPSLSRLSEEELRELEAE
GRRGLEARLQCLQNIHTLLDAAMLNIHHYLSTVTTLAPPRADGGAGAASRTNDGASAAGS
SAESLGQEKESASSSSSEQVDGAAASPQPADSTSTTSDTEQKEELDEGGVGGEDGEPNAA
ELRRRRLRKLETSTSPPPDN
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atggcgcgagcagccttggtgaccgccaccagtctggctctgactggggccgtggtggcg
cacgcctacctcctcaaacaccagttctaccccaccgtggtctacctgaccaagagcagc
cccagcatggcggtgttgtacattcaggcctttgtgttggtgttcctgctgggaaagttc
atgaggaaggtcttttttggacagctacgggctgcagaaatggagcatctcatcgagcgc
tcgtggtacgctgtgaccgagacgtgcctggccttcactgtgttcagggacgacttctcc
cctcgctttgtcgccctcttcactctcctgctcttcctcaagtgctttcactggctggct
gaggaccgggtggactttatggaacggagtccaaacatatcttggatttttcacttcaga
gtattgtctctcatgggactgctggctgtgctggacttcctgtttgtcaaccacgcctgt
cacagcatcatcatccgaggcgcctcggtccagctggtatttggatttgagtacgccatc
ctgattacgatggtgctgacgaccttcattaagtacattctgcacaccgtcgacctgcag
agcgagaacccctgggacaacaaggcggtgtacatgctctacaccgagctgttcacaggt
ttcatcaaagtgctgctctacattgccttcatgaccatcatgataaaggtccacaccttc
cccctgtttgccatccggcccatgtatctggccatgaggcagttcaagaaagctgtaacg
gatgccataatgtcccggagagcaatccgcaacatgaatactctataccccgatgctact
cctgaagatctgcaggcttctgacaacgtctgtatcatctgtcgagaggaaatggtcacc
ggggccaagaaactgccctgtaatcacattttccactccagctgcctgcgctcctggttc
cagaggcagcagacttgcccgacctgtcgcatggacgtcctccgcgcgtccaacaacaat
caggcgccggccccggccccggcccaagccccggctcctgcggcccccgccaacgcccca
gccgccccgcccgccaacgtggccccaggcatgttacccggcttcccgccaggcatcttc
cccttctggggtcccttccccggggtgccgcccccccctgccgcagcagctccaggtggc
gctgatgcgccgcagagcagcacgcaggcagccggcaccagccaggccaccttgtcgcct
gcagacgccgcacctccaggttcaacgatgcctggcttccccttctccttcccccctccc
cccttccccactgcaccatggctgatgcctccccctcctcccttcgtgtcgtccatgccg
ccgccccctccctctctgtcgcggctgtccgaggaggagctgagggagctggaggcagag
ggccggcggggcctcgaggcccgactccagtgtctccagaacattcacaccctgctggac
gccgccatgctcaacatccaccactacctcagcaccgtcaccacactcgctcctccgcgg
gctgacggcggtgccggagcagcgagcaggacaaacgacggcgcctccgcagccggcagc
agtgcggaaagtctcggccaagagaaggagtctgccagctcgtccagcagcgagcaggtg
gacggagcggccgcctcccctcagccagctgactccacttccaccacctcggacacggag
caaaaagaagagctggacgaaggaggggtggggggagaagacggagagcccaacgccgcc
gagctgaggcgccgccgcctccgaaagctggagacgtcgacatcgccgcctcccgacaac
tga
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