Gasterosteus aculeatus (three-spined stickleback): 120818909
Help
Entry
120818909 CDS
T07457
Symbol
pms2
Name
(RefSeq) LOW QUALITY PROTEIN: mismatch repair endonuclease PMS2
KO
K10858
DNA mismatch repair protein PMS2
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat03430
Mismatch repair
gat03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
120818909 (pms2)
03460 Fanconi anemia pathway
120818909 (pms2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
gat03400
]
120818909 (pms2)
DNA repair and recombination proteins [BR:
gat03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
120818909 (pms2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutL_C
DNA_mis_repair
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
120818909
NCBI-ProteinID:
XP_040031736
LinkDB
All DBs
Position
V:14357170..14361926
Genome browser
AA seq
845 aa
AA seq
DB search
MSDACSEPAGAIKAIDKHSVHQICSGQVVLTLATAVKELVENSIDAGATSVDVRLKDYGA
ELVEVSDNGKGVEEANFEGLTLKHHTSKLRDFSDLIRVETFGFRGEALSSLCALSVLSVV
TCHESSQVGTKLVFDHKGHLVQQSPHPRQQGTTVSLQQLFYTLPVRHKEFQRNIKKEYAK
MIHVLQAYCIISTGVRVTCSNQTAQGKRSTVLGTTGSPSMRDNIGAIFGPKQIQSLIPFQ
QVSPAENVIEEYGLKDADLPKQPFSMEGFVSRGDHGVGRSATDRQFFFINSRPCDPLKVT
KLVNEVYHMYNRHQYPFVALNIAVASECVDVNVTPDKRQIFLQEEKLLLAVVKTSLITMY
EAGVNKISLNFTPIPRTNDIGPVVPSNENASEPGEHAEAASRSSKSSLNLSALKAAFSSP
HSSSSVNAAKAATSGPAQKTLRTFFKHSDKPPLCRPGVATPSRPARVLPESPPVGGAELD
GFRHGRESWSGDKSEKDGASPDRVVATTTPDTWRSGPVSSSEPTDAGKKETQEEASEDPE
PLQVQSEPGTSNEGRAAGPDAKRARTDEPRPPAEHKAHTQSRRSPAVDAPVFLQKRAVPL
HFSLQELAGRVKRLQDLRRQAAGGELCYRRFRAKIDPGENQTAEAELSKEISKDMFKEME
IIGQFNLGFIIAKLNADLFMIDQHATDEKYNFEMLQQHTVLQGQKLIQPQKLHLPAVSEN
VLLENMEIFRKNGFEFLVDEDAQVMERVKLVSLPTSKNWTFGPADIEELIFMLSDSPGVM
CRPSRVRQMFASRACRKSVMIGTALNVAEMKKLLVHMGEIDHPWNCPHGRPTMRHLANLD
IISQE
NT seq
2538 nt
NT seq
+upstream
nt +downstream
nt
atgtctgatgcttgctctgaacctgcaggagccataaaggccattgacaagcactctgtg
catcagatctgctcgggacaggtggtgctgactttggccactgcagtgaaagagctggtg
gagaacagcatcgacgcaggcgccactagcgttgatgtcaggctgaaggactacggagct
gaactcgtggaggtgtcggacaacggcaaaggggtagaggaggccaactttgaaggactg
acgttgaagcatcacacgtcgaagctgagggatttctctgatctcatccgcgtggaaacg
tttggcttcagaggggaagccctcagctctttgtgtgctctgagtgtcctcagtgtggtg
acgtgccacgagtccagccaggtgggcaccaagctggtgtttgaccacaaaggccacctg
gtgcagcagtcccctcatccccggcagcaaggcaccacagtcagcctgcagcagctcttc
tacacgctgcccgttcgacacaaggagttccagcgcaatattaagaaggagtatgccaaa
atgatccatgtcctgcaggcctactgtatcatctctaccggagtgcgcgttacctgctcc
aaccaaaccgcgcagggaaagcgcagcacagtcctcggcaccaccggcagcccgagtatg
agggacaacatcggggccatatttggaccaaaacagatacagagtcttattccttttcag
caagtgtctcctgcagagaatgttattgaagaatatggactcaaagatgcagatctaccc
aagcagccttttagcatggaggggttcgtgtcacgaggagaccacggtgttgggagaagt
gccactgacaggcagttcttcttcattaacagccggccttgtgatcctctgaaggtgact
aaacttgtgaatgaagtgtatcacatgtacaacagacaccaatatccatttgttgccttg
aacatagctgttgcctcggagtgtgtggacgtgaatgtgacgcccgacaaacggcagatc
ttccttcaggaggagaaactcttgctggctgtcgtgaagacctctctgatcaccatgtat
gaggctggagtcaataagatcagcctgaactttacccccatacccagaaccaatgacatc
ggtcctgtggtcccatctaatgagaacgcgtccgaacccggagagcacgcggaagcagcg
tctcgcagctcaaagtcgtccctcaacctgtccgccctgaaagcagctttctcaagtcct
cacagctccagttctgtgaacgctgccaaagctgcgaccagtggccctgcacagaaaaca
cttaggaccttttttaagcacagcgacaaacctccgctctgccgcccaggggtcgcgacc
ccttcaagacctgccagagttctccccgagagccccccagtggggggggctgagctggac
gggttcaggcacggaagggagtcgtggagcggcgacaagtcggaaaaagacggcgcctcg
ccagatcgcgtcgtcgctacgacgacaccggatacttggcgctctggcccggtcagttcc
tctgaaccgaccgacgctgggaaaaaagaaacgcaggaagaagcgtcagaggaccccgag
cccctacaggtccaaagtgagccgggcacttccaacgagggccgtgcggcgggcccggac
gccaagagggcccggacagacgagccgcgcccccccgccgaacacaaggcccacactcag
tcgagacgctcgccggcggtggatgctccggtcttcctgcagaaaagggcggtgcccctc
cacttctccttacaggagctggccgggagggtgaagcggctgcaggacctgcggagacag
gcggccggcggtgagctgtgctatcgacgcttcagggccaaaatcgaccccggagaaaac
cagactgcagaggcggagcttagtaaagagatcagtaaagacatgttcaaagagatggag
atcatcggccagttcaatctgggcttcattatcgccaaactcaacgccgacctcttcatg
atcgaccagcacgccacggatgagaaatacaactttgagatgctgcagcagcacacggtg
ctgcaaggacagaaactcatccaacctcagaagctccacctccccgccgtcagtgaaaac
gtcctcctagagaacatggagatattccgaaaaaatggctttgaattccttgtggatgag
gacgctcaggtgatggagagagttaagctggtgtctctgcccaccagtaaaaactggacc
tttggcccggccgacattgaagagctgatcttcatgctgagtgacagcccgggggtcatg
tgtcgaccgtcccgcgtcaggcagatgtttgcctcccgagcttgtcgaaaatctgtgatg
atcggcactgccctgaatgtagctgagatgaagaagctcctggtccacatgggggagatt
gaccacccgtggaactgtcctcacgggaggcccaccatgagacacctcgccaacctggac
atcatctcacaagaataa
DBGET
integrated database retrieval system
