Gasterosteus aculeatus (three-spined stickleback): 120824373
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Entry
120824373 CDS
T07457
Symbol
crocc2
Name
(RefSeq) LOW QUALITY PROTEIN: rootletin
KO
K16469
rootletin
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
03037 Cilium and associated proteins [BR:
gat03037
]
120824373 (crocc2)
Cilium and associated proteins [BR:
gat03037
]
Primary cilia and associated proteins
Other primary cilia associated proteins
120824373 (crocc2)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rootletin
HTH_24
Ssu72
Motif
Other DBs
NCBI-GeneID:
120824373
NCBI-ProteinID:
XP_040041115
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All DBs
Position
VIII:2891635..2917784
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AA seq
1952 aa
AA seq
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MSGRREAGAPRLEAVIQKLERSLLHSDSSSGERTLTLGGDGQESGVGPALVSTRIRQIIT
RNLAEPLADGSSEISELEGSRAPREQLSPSRRDRLPVKQASLVERLDQMPVLPSAADQDS
VAAGSLQLQNNERAYRQKLQAYQQAQQRQAQLVHKLQTKVLQYKKRCGELEEQLLEKTSE
SEKMRLLLQGHLDSAQRQQRAEQDPNEAVRNKSSQLEEEQKRCARLSQVNSMLREQLEQA
GTVNQGLTESMWKAREDADLCDSRLRRAQETCTSRMGREQTSVKSLWRQIVSLRSAFTQL
RTFTDRTLSDMRREYVAASQQLHVACMNIEAKVTQESTSSGVDMSDLEGRLKDKLKEAMQ
LQCRWDAEKVELNSRIQELTDTVKHLQGQSSAKDSSLCTMQISLDRMETRRTEDKAEMEA
LHTEIQALQNVLCHVDQLVGGEGGGSGSDNASSSPLHCRSPLRNTTLVAVHRALSKHQKQ
TQDLRGRLDASLEQVATLRDHLQESDTERRELQQKIQQVRRESEEAKTALEENLREGNRY
RCSLELMSSEKGGVEKRLSRLQHEADSRCAELEALRGSSLELQRQRDLLREQREDLEKQL
ARQRTEAQRGERSLEELERKHSVVRQELVAVKEALSQITLQKEVLEDDKSSLALALGKKE
SQSAAHELALTKLQHQEAALKDSLAKMAALSEGLAKDKVELNRILLQTEGEKTELAEHRR
EAEMERAAAREETARVQQEMMDQLAEKRALEITHGHLQGVCQRLEAELRLLQEEKARALE
QHSQVNRQMQTVSEELCACRKELEAQTAAQKRAAQDREELAKAGAALDVRLNSADRKACG
LTQELAALRAEKESLETALDESQELASSLEVECTRMEGEKRSLLLANEALMRDAARVRAD
AERQSAQAAQECTKLEEKLAQVERSGLLTLKSKEQVHREQLEAERRQKEQQCAELTVQLE
QAEEQLRRRREEWRLHSQKELQQVQEELTRQQQEFNQSLLRAESEKQQALSQKEAEKAAL
MEKLAALQQDLAAAGMEQERVQREALGKTQQEKNAAAVLQSELRNLQSQFEESLNSHEDT
KKSLIEQVRELNQQREHTQQELEGLRRQLQEAADGLIKGRRELVEAHRQLQECARERDNQ
RKDSLDLRRLLGDETREKEAIQASNQELRASIKRAESDNSSLRRAVEEKEQKAAVSEECR
SSMHQEATTLRGSMRELEKSRLQARRDVQELRRLVKVLGGENGRQKQELRELQARLCQEE
QKEEEARREAFTLKQRVLECDAGREAALNEVSALQRRVLDLEASERQSQELLQDKEAYQQ
QCDQKHSGATAQLEEALDDAGIQIKQLAEQVGLAESKVQGLQERLGASDAQRRDLELKLA
GLYSALCRAAGTHQARLSGSPASRKRSPSPRKNCLQVKGGDNETDGCVLSLSRGEEEHLD
VDIVHAALREFQQELRDTQREREEAKTQVVVLSQQVTDLLDSQDKSATQLLQLQRSLKQS
EQGKREMAERLQKAHASLSLQEEIERHNDREKRSLGEEVVQLRTSLRAAEAETRALQDTL
EPLQGLESRTNVEQQKLKQSLHAAESRASRLELSQRTLEGELQRARLLAAELDAEAGALR
ERLTELRRKLSDSEDRGAALRLSEETLATALARAEQHESQLREQIHKLSSTLGDRRTSGG
ALQEQLAQLQRAVTASEQDRRLLQERLDQTRNALSERKRLSHALTEQTQDLQRAREDLEL
KNSELEKHNRTLKESLKQQQDAEAQAQESSQQLHREKEELQEQVTHLQSSLLQLHSERAE
MERALARLGKDKSTLRKTLERVEMERLRREEAEAAAAREKGQSGRTVRCLEQELAEKQAE
LQTVQAQASQLEHAHAQRLLEVTARHHLELDAETERLRDSQFEAEQALETREKAHRQRVK
GLEEQVLTLREQLDQETTRRQAYFNQMLRRGV
NT seq
5859 nt
NT seq
+upstream
nt +downstream
nt
atgagtggtcggcgggaggcaggtgcgcctcgcctggaggccgtgattcagaagttggag
cggtctctgcttcactcggacagcagctcaggagagaggactctgacacttggaggtgat
ggacaggagtccggtgtcggccccgcgcttgtctccacccgcatccgccagatcatcact
cgcaacctggcagaaccgctagctgatgggagttctgagatcagtgagctggaggggagc
agggccccgagggagcagctttctccgagccggagggatcggctaccagtcaaacaggcc
agtcttgtagaaaggctggatcagatgccggtgctgccgtcagcagcggaccaggacagt
gtggcagcaggatccctgcagttgcagaacaacgagagagcttacaggcaaaagctccag
gcctaccagcaggcccagcagagacaggcccagctggtccacaagctacagaccaaggtt
cttcagtacaagaagaggtgcggggagctggaagagcaactactggagaagacctcggag
tctgagaagatgaggctgttgctgcagggccacctggactcggcccagcgtcagcagcgg
gcagagcaggatcccaacgaggctgtccgcaataagtcctctcagctggaggaggagcag
aagagatgcgcccgcctcagccaagtcaactctatgctgcgggaacagctggagcaggcc
ggcacggtcaaccaggggctgacagagagcatgtggaaggcccgcgaagatgctgacttg
tgtgattcccgtctgcgcagagcgcaagagacgtgcacatcacggatgggccgcgaacag
actagcgtcaaaagcctgtggcgtcagattgtttccctgcggagcgccttcacccagctg
aggactttcactgacaggactctgtctgatatgcggagggagtacgtcgctgccagccag
cagctgcatgtggcctgcatgaacatagaggccaaagtaacgcaggagagcacctctagt
ggcgtggacatgtcagacctggaggggcggctgaaggacaagttgaaagaggccatgcag
cttcagtgccgctgggatgctgagaaagtggaactgaactccagaatccaggagctgact
gacacagtgaagcacctccaaggccagagcagcgcgaaggattccagcctctgcaccatg
cagatcagtctggacaggatggagacgaggagaactgaggataaagcagagatggaggcc
ctccacacggagatccaagccctccaaaatgttctctgtcatgttgaccagttggttggc
ggtgagggtggaggcagtggctctgataatgcgtcctcctcacctcttcattgccggtct
cctctgaggaacaccactctggtggctgtgcacagggctctctccaagcatcagaaacaa
acacaggacctgcgcgggcgtctggatgcttccttggagcaagtggcaaccctgcgggat
cacctgcaggagagcgacactgagaggagagagctgcagcagaagatccagcaagtaagg
agggaaagtgaggaggctaagaccgctctggaggaaaacctcagagagggcaacagatac
cgctgctcactggagctcatgtccagtgagaagggcggcgtggagaagcggctgtcccgg
ctgcagcacgaggcggactcccggtgtgccgagctggaggccctgcgcggctcctcgctg
gagctccagagacagcgggacctcctcagggagcagagggaggacctggagaagcagctg
gcacgccagcgcacggaggcccagagaggcgagaggagtctggaggagcttgaaaggaaa
cactcggttgtgcgtcaggagcttgtggcggtgaaggaggcactgagtcaaatcaccctg
cagaaggaggtgttggaggatgataagtccagcctcgctttggctctcggcaagaaggag
tcccagagtgctgcacacgagttagccctcaccaaactacagcatcaggaggctgccctt
aaagattctctggctaaaatggctgccctgagcgaaggcctggccaaagacaaggtggaa
ctcaatcgcattctgctgcagactgaaggtgagaagacagagctcgctgaacacagacgg
gaggctgaaatggagcgggcggcggcccgggaggagaccgcacgtgtgcagcaagagatg
atggatcagctcgctgagaaacgagccctggagatcacccacggccacttgcagggtgtc
tgccagaggctagaagcagagctgaggctcctgcaagaggagaaggctcgggccctggag
cagcactcccaggtcaacaggcagatgcagactgtgtcagaggagctttgtgcgtgcagg
aaggagcttgaggcacagaccgcagcccagaagagagctgcccaagacagggaggagctg
gccaaggccggggccgctctggatgtcaggctaaactccgctgaccgaaaggcatgtggt
ctcacgcaggagctcgctgcacttagagcggagaaggagtccctcgagacggcgctggat
gagagccaggagcttgcctcgtctctggaggtcgagtgcaccaggatggagggggagaag
cgcagcttgctcttggctaacgaggccttgatgcgcgatgccgctcgggtgcgtgcggat
gctgaacggcagtctgcgcaggcggcgcaggagtgcaccaagctggaggagaagctggcc
caggtggagaggagcggcctgctgaccctgaagagcaaagagcaagttcacagagagcag
cttgaagccgaacgacggcagaaggaacaacagtgcgccgagctgacagttcagctggag
caggctgaggagcagctacgtagacggcgggaagaatggcgtctgcacagccagaaggag
ctgcagcaggtgcaggaggagctgaccaggcagcagcaggagttcaaccaaagcctcctg
cgggctgagagtgaaaagcagcaggctttgtcccagaaggaggcagagaaggctgccctc
atggagaagctcgccgccctgcagcaggacctggccgcagcaggcatggagcaggagcgc
gtgcagcgggaggcacttggcaaaacgcagcaggaaaagaacgccgcggccgttcttcag
tctgagctgcgaaacttacaaagtcaatttgaggaatccttaaactcccatgaggatacc
aagaagagtctgattgagcaggtcagagagttaaaccagcagagagaacacacacaacag
gagttagaggggcttcgccggcagctgcaggaggcagcggatggtcttattaaagggcga
agggagttggttgaggctcacagacagctccaggagtgtgcacgggagcgggacaatcaa
aggaaagactccctggacctgagaaggcttttgggggacgagaccagagagaaagaggct
atccaagcctccaaccaggagctaagagcttccatcaagagagccgagagcgacaacagc
agcttaagacgagccgtggaggagaaggagcagaaagctgccgtctcagaggaatgcagg
agctcgatgcaccaagaggcaaccaccctacggggtagtatgagggagctggagaagtct
cgcctgcaggcgcgcagagacgtgcaggagctgcgcagactggtaaaggtccttgggggc
gagaacggccgtcagaaacaggagctgcgagagctgcaggcccgtttgtgtcaggaggag
cagaaggaggaggaggcgcggcgcgaggctttcactctcaagcagagagtcttggagtgc
gatgccggcagagaggcagcgctcaatgaggtttcagctctgcagcgccgtgtgctggac
ctggaagcctcggagcgtcagagtcaggagctgctgcaggacaaagaggcttatcagcag
cagtgcgaccagaagcacagcggagcaacagcacagctggaggaagcgctagacgacgcc
ggcatccagatcaagcaactcgccgagcaggtcggcctcgcagagagcaaagtccagggc
ctgcaggagcggctgggcgccagcgatgcacaacgcagggacctggagctcaagttggca
gggctgtattcagctctgtgccgcgctgccggcacccaccaagcgaggctttccggttca
cctgcgtcccgcaaacggtccccctctccccggaagaactgcctgcaagtaaaaggggga
gacaatgagacggatggatgtgtattgtccttgtctcgtggagaagaggaacatctggat
gtggacatagtgcacgccgccctgcgggaattccagcaggaactcagggacacacaaaga
gagagggaggaagccaagactcaggtggttgttctgagtcagcaggtgacggacctacta
gacagccaggataagtcggccactcagctgcttcaactacagaggtccctgaagcaatca
gagcaagggaaaagagagatggcagagcggttgcaaaaggcccatgcatcgctttccttg
caagaagaaatagaacgtcacaatgacagggagaagagaagccttggggaggaagtagtc
cagctcagaaccagtctgcgagctgctgaggctgagacaagggcactgcaagacacgttg
gagcccctgcaaggtttggaatcgcgaacaaacgtagaacaacagaagctgaagcagtcc
ctgcatgcagcggagagccgggcgagccgcctggagctctcccagcgcaccctcgagggc
gagctgcagagggcccggctcctggcggcggagctggacgcagaggcgggcgccctgcgg
gaacgactgacggagctgaggaggaagctgagcgacagcgaggaccgcggcgccgcgctg
aggctcagcgaggagacgctggccacggcgctcgctcgggccgagcagcacgagagccag
ttgagagaacagatccacaaactgtccagcaccctcggcgaccgcaggaccagcggcgga
gccctgcaggagcagctcgcacagctgcagagggctgtgactgccagcgagcaggaccga
aggctgctgcaggaacgcttggatcaaacccgaaatgccctctccgagaggaagaggctg
agccacgcactaacagagcagacccaggaccttcaaagagcccgagaggacttggagctt
aaaaactctgagctggagaagcacaacaggaccctgaaggagagcctgaagcagcagcaa
gatgctgaagcgcaggcccaggagagctcccagcagctgcaccgagagaaggaagaactc
caggagcaggtcacccatctgcagagctctctgctacagctgcacagcgagagggcagag
atggagagggcgctggcgcgcctcggtaaagacaagtcaacactccgaaagacactggag
agggtggagatggagaggctgaggagggaggaggcagaggcggcggcggccagggagaag
ggtcagtcgggacggacagtccgctgcctggaacaggagctggctgaaaagcaggctgag
ctgcagactgtgcaggcccaagcctcccagctggagcacgctcacgcacagcgcctcctg
gaggtgacggcccgccatcacctcgagttggatgcggagaccgagcgcctgcgagacagc
cagtttgaagcagagcaggccctggagacaagggagaaggcacatcggcagagggtcaaa
ggcctggaggagcaggtgctgaccctgagagagcagctggatcaggagacgacaagacga
caggcctatttcaatcagatgctccgtcgcggtgtgtaa
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