Gasterosteus aculeatus (three-spined stickleback): 120827711
Help
Entry
120827711 CDS
T07457
Symbol
col4a3
Name
(RefSeq) collagen alpha-5(IV) chain
KO
K06237
collagen type IV alpha
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat04510
Focal adhesion
gat04512
ECM-receptor interaction
gat04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
120827711 (col4a3)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
120827711 (col4a3)
09142 Cell motility
04820 Cytoskeleton in muscle cells
120827711 (col4a3)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
gat04147
]
120827711 (col4a3)
00536 Glycosaminoglycan binding proteins [BR:
gat00536
]
120827711 (col4a3)
Exosome [BR:
gat04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
120827711 (col4a3)
Glycosaminoglycan binding proteins [BR:
gat00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
120827711 (col4a3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
120827711
NCBI-ProteinID:
XP_040046735
LinkDB
All DBs
Position
I:complement(394551..418395)
Genome browser
AA seq
1527 aa
AA seq
DB search
MGYPGFSGVPGYAGLQGQQGPRGAKGDTFVFPPTRDIKGATGPPGRDGEDGLGGDPGEPG
LSGPPGSAGLPGTPGFPGLQGEKGQEGPSPVIPGPSGQKGDRGPPGIPGQKGIKLYAEGP
KELKGEPGDVGLKGCQGFPGVPGTLGVKGEKGGRGDPGSLGKPGKDGVFGELGQQGDPGD
RGYLGPPGIEGATGEKGERGSPGFPGELLFRHHYLKGQRGVPGPRGPEGVQGEQGFIGFP
GLQGEPGVASTSPPGPQGPPGLAGPKGDPGGPGPLVFGPLGEVGALGAGGAEGEPGEPGI
PDFVPGGVGRPGAKGVKGPLGFPGARGEEGPAGEKGQVCPDIQGPAGKPGRRGEDGAPGS
VGSPGAKGQTGYNGVQGPKGQQGLIGNKGLQGPQGPIGDPGIMQRVGVKGEEGDRGESGP
PGPDGRDGSPGFTGRKGALGQKGNPGPLGQKGNMGRTGDTGPRGLMGQLGPSGPLGIGDP
GPVGSKGNVGVLGPRGDPGNPGEKGSPREIMTSPGDPGPKGEKGLPGIPGAKGVTGSVGA
PGFVGPMGEKGDDGFSVEGPLGFPGFKGLKGPPGTPGVPNFGIKGRAGPSGPPGIPGPKG
NIYRGICFPGQQGQLGPQGEDGSVGPQGDPGPEGSDGVPGPVGQVGYPGPKGHSGLNGLP
GPGGPVGRCFPGAPGPDGEEGQTGIFGFTGMRGLKGDRGDPGRPGFGAPGPQGSYGVPGF
DGTPGPVGVIGLKGLRGTNGEPGSTGTRGDLGPPGALGSPGDDGRPGEPGRDGAKGQTGA
DGSGGSQGPQGPPGDRGEPGPKGVRTAVDIYGEPGEPGAPGSTGVTGSKGESGLTGPQGL
DGRTGRPGDGGPQGPPGDTGRGGWRGPPGPCGLNGNQGDMGMPGFKGEKGCTGPCGKPGP
DGIPGPAGLKGSKGESSPSGPGSKGPPGAKGNPGCSGGPGTKGEPGDVGDLGPSGACGPC
GPKGALGAPGCRGSPGTQGEKGCDGPPGINVLPGPAGLTGTKGAPGVPGPAGSRGNQGQD
GIPGPPGEKGAMGGSRAGPRGADGKTGSPGYPGEPGSPGACGPPGPNGPGGNPGCYGSPG
PPGPSGPVGKEGVCIEGSKGNNGIPGQRGPKGQSGLKGPPGSPGPGFKGEKGSKGATGFQ
GPPGYPGEQGPPGKPGEDRPPGPRGPVGQMGPTGVTGPVGIKGEAGQAGFVGSQGPPGPP
GRRGQKGEDVPLVPGDQGPAGPPGLKGEKGPPGARGIPGGPGLKGVRGSAGRRGPGGRPG
VMGDQGDQGVDGLKGVPGPKGSLGAKGAPGRPGPCGNPPDTNGFMFTRHSQNLLVPECPA
GSAELYSGYSLLFINGNNRAHGQDLGSLGSCLPRFTTMPFLFCNTDSTCRYASRNDYSYW
LSTDQPLPSSVPLISGDSLRNYISRCSVCEARANVIAVHSQTSLVPDCPSGWDALWFGYS
FVMETGVGAEGSGQPLASPGSCLENFRKIPFIECHGRGTCNYYTDSYSYWLAALNPADMF
SKPTPQTDSGDFPARLISRCRVCMKQL
NT seq
4584 nt
NT seq
+upstream
nt +downstream
nt
atgggttaccctgggttttccggggttccgggatacgccggcctacagggtcaacaagga
ccacgaggggcaaagggtgacacctttgtcttcccgcccactcgggatattaaaggagca
acgggaccaccaggacgagacggagaagacggcctgggtggagatccaggtgaaccaggc
ctgtcaggaccaccaggatccgctggacttccaggaactccagggtttccagggttacaa
ggagagaagggacaggagggtcccagtccggtgataccaggtcccagtggacagaagggg
gatcgcggaccaccagggatccctggacagaaaggaatcaaactgtatgccgaaggaccg
aaagaactgaagggggaaccaggtgacgttggactgaaaggttgtcaaggatttcctggc
gtgccggggacactaggggttaaaggagaaaaaggaggccgaggcgatcctggctcacta
ggtaaacctggaaaggatggagtctttggagagctgggacaacagggagaccccggggat
cgcgggtaccttggtcctcctggtattgaaggagcaacaggagagaaaggtgaacgtggt
tctccaggttttccaggagagttgcttttcagacaccattacctgaagggccagcgcggt
gtccccggacccagaggacccgaaggagtccagggagaacaagggttcattggttttcct
ggactccagggtgagccaggtgtggcctcaactagtccaccgggcccccaggggcctccg
ggcttagccggacccaaaggagacccaggggggccggggcccctcgtctttgggccccta
ggagaagtcggagcacttggagctggtggagctgaaggagaaccgggagaaccgggaata
ccagattttgtgccgggaggggtcggtcgtccaggagctaaaggtgtgaaaggtccgttg
ggtttcccaggagctagaggagaggaaggaccggcaggtgagaagggacaggtgtgtccc
gatatccaaggacctgcaggtaagccaggaaggcgaggtgaagacggtgcaccaggatcg
gttggttctccaggagccaaaggtcaaacagggtacaacggtgttcaaggaccaaagggt
caacagggcctcattgggaacaagggcctccagggaccacagggacccatcggtgaccct
ggcatcatgcagagggtcggtgtgaagggagaggagggagaccggggggagtcaggacct
ccgggtccagacgggagagatgggtctccgggatttaccggacgaaaaggtgctctggga
cagaaagggaaccctggccctctggggcaaaaaggcaacatggggcgtactggtgacacg
ggtcccagaggactaatgggtcagctggggccgtcgggaccgctcggaattggggaccca
ggacctgtggggtctaaaggcaacgtaggggtgctaggacctcgaggagatcctgggaat
ccaggggaaaaaggttctccgagggaaatcatgacctctccaggagacccaggaccgaaa
ggagagaaaggtttacctggaatccctggagccaaaggtgtgacaggaagtgtaggtgct
ccaggattcgttggcccaatgggagagaagggagatgatgggttctctgtcgaggggcct
ctaggttttccagggttcaaaggactcaagggcccccccggaactccaggtgtaccaaac
tttggtattaagggacgtgcagggccatcgggccccccagggatcccgggcccgaagggg
aacatatacaggggtatctgttttccaggtcagcagggtcagttgggcccccagggggaa
gacggctccgtgggtccccaaggagatcccggacccgaaggatcagacggagttccggga
cctgtgggacaagttggatatcctggacccaaaggacatagtggcctgaatggtttacct
ggtccgggtggtcctgttggacggtgttttcctggagctcccggacccgatggagaggag
ggacagacgggtatcttcggatttacagggatgcggggtctaaagggcgacaggggggac
cctggccggcctggctttggggccccggggcctcaggggtcttatggagtgcccggcttt
gatgggactccaggtccagtaggggtaattggactgaagggcctgagggggaccaatggg
gaaccgggaagtacaggcaccagaggagacctgggtcccccgggggccctcgggagtccg
ggggatgatgggagaccaggagagcccggaagagacggagcaaaaggtcaaacaggtgca
gacgggtctggtggttcccaagggcctcaggggcccccgggggaccgaggagaacccgga
ccaaaaggagtccggacagccgttgatatctatggagagcctggagaacctggagcccct
gggtccaccggtgtcaccggtagcaaaggagaaagcggcctcacggggccacagggtctc
gatggcagaaccggcagacctggtgacggcgggccacaaggaccacccggagacacaggc
agaggtggatggagaggtcctcctggtccttgtggactcaatggtaaccagggagacatg
gggatgccaggttttaagggtgagaaaggttgcactgggccttgtgggaaacccggacca
gatggaataccaggcccagcaggactcaaaggttctaaaggagaatcgagtccttccgga
cccgggtctaaagggcctccgggagcgaagggaaatccaggatgttcaggaggaccaggt
actaagggtgaacccggcgatgttggagacttgggtccctccggagcctgtggcccatgt
ggccccaaaggagccctcggagccccaggatgcagaggttctcctgggactcaaggtgaa
aagggttgcgacggtcctcccgggataaatgtcctcccaggacctgctggcctaacaggt
acaaagggggctcctggagttcctggtccagctggttccagaggaaaccagggacaggac
gggataccaggacctcctggagaaaagggagcaatgggtggttccagagccgggccccgg
ggcgcagatgggaaaactggttcacctgggtaccccggagagccgggttctcccggtgct
tgtggtccacctggtccgaacggtcccggaggaaacccaggttgttatggttctcctgga
cctcctggtccttctggtcccgttggcaaggagggagtctgcatagagggaagcaaaggc
aacaacggaatcccaggacaacgaggaccaaaaggtcagtcaggccttaagggccctcct
ggttctccaggtcctggttttaaaggagagaagggatctaaaggagcaacaggtttccaa
ggaccacctggttaccctggtgaacagggacctccaggcaaaccgggtgaagatagacca
ccagggcctcgaggaccagtaggccagatgggacccactggtgtcactggacccgttggt
atcaagggggaggcgggacaggcaggtttcgttggctctcagggtcctccagggccacct
gggaggagaggccagaagggagaggatgtgccgctggtgccgggagaccaaggcccagct
ggaccgccggggctcaaaggagaaaagggacccccgggggcccgagggattcctggaggt
ccaggtctgaagggcgttagagggtcggctggtaggagaggaccgggggggcgtcccgga
gtgatgggggatcagggcgaccaaggggttgacgggttaaagggtgtcccaggtccgaaa
ggttcgcttggtgctaaaggtgctccgggccgaccgggtccttgtggcaacccaccggat
accaacggcttcatgttcacaagacacagccagaatctccttgtcccagaatgcccggca
ggatctgccgagctgtacagtggatactcgctgctcttcatcaatgggaacaacagggcg
cacggacaagacctgggttcactcggtagttgtctacctcgtttcacaaccatgcccttc
ctgttctgtaacaccgacagcacctgccgctacgcttcccgtaacgactactcctattgg
ctgtccaccgaccagccgctgccaagcagcgtgccgctaatctccggggactcactgagg
aattacatcagccggtgttccgtgtgcgaggccagagccaacgtgatagcagtccacagc
cagacaagcctggtcccagactgcccctcgggctgggacgccctctggtttgggtactcc
tttgtcatggagacaggggtgggggccgaggggtcaggtcagcctctggcgtcgcccgga
tcctgtctggagaacttccgtaagattcctttcatcgagtgtcacggcagaggaacctgc
aactactacacagactcctacagctactggctggctgccctcaacccggcagacatgttc
agtaaaccgacgcctcagactgactcaggagactttccagctcgtttgatcagccgatgt
cgagtctgtatgaagcagctgtga
DBGET
integrated database retrieval system
