Gasterosteus aculeatus (three-spined stickleback): 120829022
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Entry
120829022 CDS
T07457
Symbol
prdm16
Name
(RefSeq) histone-lysine N-methyltransferase PRDM16 isoform X1
KO
K22410
[histone H3]-lysine9 N-methyltransferase [EC:
2.1.1.367
]
Organism
gat
Gasterosteus aculeatus (three-spined stickleback)
Pathway
gat00310
Lysine degradation
gat01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
gat00001
]
09100 Metabolism
09105 Amino acid metabolism
00310 Lysine degradation
120829022 (prdm16)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
gat03000
]
120829022 (prdm16)
03036 Chromosome and associated proteins [BR:
gat03036
]
120829022 (prdm16)
Enzymes [BR:
gat01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.367 [histone H3]-lysine9 N-methyltransferase
120829022 (prdm16)
Transcription factors [BR:
gat03000
]
Eukaryotic type
Zinc finger
Cys2His2 PRDM
120829022 (prdm16)
Chromosome and associated proteins [BR:
gat03036
]
Eukaryotic type
Histone modification proteins
HMTs (histone methyltransferases)
HKMTs (histone lysine methyltransferases)
120829022 (prdm16)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C2H2
zf-H2C2_2
zf-C2H2_4
PRDM2_PR
zf-C2H2_6
zf-C2H2_jaz
zf-C2H2_11
zf-H2C2_5
zf-BED
SET
zf-C2H2_8
Motif
Other DBs
NCBI-GeneID:
120829022
NCBI-ProteinID:
XP_040048693
LinkDB
All DBs
Position
XII:12603669..12770589
Genome browser
AA seq
1420 aa
AA seq
DB search
MRSKARARKLAKNDSEPVDSMYDTEADLPGLASGGGADSLEDDTDDGVINMSPLPSPTPS
HPNNNNNHHHHLLHPHIYATHHHHHLHNNNNNNSNSSSMDQDFTTPKEGSPYEAPVYIPD
DIPIPSDLELRESSVPGAGLGVWAKTCIGVGERFGLHSPLHHEATGKDGSFGWEQMMNDH
DEDSPDGCIKKVVDDMGNIKFAFDTGPDAPSSSWLKYVRSAPSFEEQNLAACHLTGDQIY
YKAVRDIEAGEELLVYMKDGIFPEGSMAPNLQDEQMYRCEDCDELFSSTLELRRHQKYSC
SSSGSIFDTLREDFKQEREDSDEPVHECKDCEKIFPNEYSLGQHMIVHTEEREYKCDQCP
KAFNWKSNLIRHQMSHDSGKRFECENCDKVQHTRHVFTDPSNLQRHIRSQHVGARAHTCP
ECGKTFATSSGLKQHKHIHSSVKPFICPDGLRLFVPPGEVCHKSYTQFSNLCRHKRMHAD
CRTQIKCKDCGQLFSTTSSLNKHRRFCEGKNHYGSPAGMFNPGIPLSSSPIMAKVKSHHP
HLQGLNHSGLGFTDYFPSRPHPHAGLPFSPGAQGFPPLPHGFPGLFSPSLYQRPPLLPAS
PLLKNPLGGGSQEVKLPRSPLDAPPLSLVSSTNTNGGNSLNPLEVKEKENKLNFSSGEAK
PKSKMADLSDGSDLEDVNTTSGTDLETTTGTASGDGSDLESDGESERERSGKRRKPSAIS
SQEGHQLEDTDSALITAVSSSGNFSVERPFQFSASSQHSFFPPPDEQALPPTHTNANAAT
TDSIKAIASIAEKYFGPGLIGLHPEKKMGPLPYHSMFPFQFLPNFHNSLYPFAADRSALN
PGMFFKAEPKSPHEQLHKMVSGGPRAPAPTAESPFDLTTKAKEPKSGHPTPANPSNPKSS
TGSSSGPLATPSGEEQPLDLSIGGRSRGGHNGVVAEPQNRKNHIFGVGKGVSVKDETPAG
FPQHHSQSLHHSAIAQHQQQHAQQHQPPPLHYAKPSAFFMDPIYSRVEKRKLLDPVGALK
EKFLRPSPPLFHPQMSAMENMTEKLESFGALKLDAPPNSLQHAHPLFNFRSPPPSLSDAI
LRKGKERYSCRYCGKIFPRSANLTRHLRTHTGEQPYRCKYCDRSFSISSNLQRHVRNIHN
KEKPFKCHLCNRCFGQQTNLDRHLKKHEHENIPVSQQSGMLSNLGTTISSPNSEPDNHAL
LDEKEDSYFSEIRNFISNNEMNQASSSTDKRSGQAEEELPPSHSLSNSKLGHRGLEEEEE
EVEGDDEEEEEGSLTEKSHDEAPESPSLVTTGVYEEDEEEEETEAAPLPMGYEHTRRCIE
EGSLLDLEGLPSFPKSLDGLRKAASDEQPFDVKDIFNTSLESEALKETLYRQAKTQAYAM
MLSLSENNPLHAPSQNSLDAWLSMGGGPSETGGFHPLNHM
NT seq
4263 nt
NT seq
+upstream
nt +downstream
nt
atgagatccaaggcgagggcgagaaaactggcaaaaaatgacagtgagccagtggacagc
atgtacgacacagaggccgacctcccgggtttagcgagcggaggcggcgccgacagcctg
gaagacgacacagacgacggtgtcatcaacatgtcccccctgccctcacccactccttcc
catccaaacaacaacaacaaccaccaccaccacctgctgcacccccacatctacgccacc
caccaccaccaccaccttcacaacaacaacaacaacaacagcaacagcagcagcatggac
caggacttcaccacacccaaggagggctcgccctacgaggcaccggtctacattcccgat
gacattcccattccgagcgacctggagctgcgcgagtcctccgtgcccggtgccggcctc
ggtgtttgggccaagacctgcattggcgttggcgagaggtttggtctgcacagcccgctg
catcacgaggccacaggcaaagacggctcctttggatgggagcagatgatgaatgaccac
gatgaagactcccctgacggctgcattaaaaaggtggtggatgacatgggcaacatcaag
tttgcgtttgacacgggcccggacgcccccagcagcagctggctcaaatacgtccgctcc
gccccgtcattcgaggagcagaacctcgccgcctgtcatctcaccggagaccagatttat
tataaagctgtccgggacattgaagcaggggaggagctcctggtgtacatgaaggacggc
attttccccgaaggatccatggcacccaacctgcaagacgagcagatgtaccgctgtgaa
gactgtgatgagctgttctcctcaacgcttgagctgcggcggcaccagaagtattcgtgc
tctagtagcggctccatctttgacacactgagagaggacttcaagcaggaacgcgaggac
agcgacgagcccgtccacgaatgtaaagactgtgagaagattttcccaaatgagtacagt
ctgggccaacacatgatagtccatacagaggagagggagtacaagtgtgaccagtgcccc
aaagccttcaactggaagtccaacctcatccgtcaccagatgtcacatgacagtggcaag
cgttttgagtgtgaaaactgtgataaggtacagcatacccggcacgtgttcacagatccc
agcaaccttcagcgtcacatccgctcccagcacgtgggggcacgcgctcacacgtgcccc
gagtgtggcaagacctttgccacctcgtcaggcctcaagcagcacaagcacatccacagc
agcgtcaaaccttttatctgccctgatgggctgcgtctatttgttcccccaggcgaggtg
tgccacaaatcctacacccagttctccaacctctgccgccacaagcgcatgcatgctgac
tgccgtacccagatcaaatgtaaagactgtgggcagttgttcagcactacctcctccctc
aacaagcaccgccgcttctgtgagggcaaaaaccattacggttctccagcagggatgttc
aaccctggcatccccctgagctccagccccatcatggccaaggtcaagtcccaccatccc
cacctccaaggcctcaaccattcaggtttaggcttcactgactactttccttctagacct
caccctcatgctgggttgcccttctcccctggagcccagggcttcccacccctacctcat
ggtttcccagggctcttctccccatcactgtatcagcgaccacctttattgccggctagc
cccttgttaaagaacccgctgggcggtggcagtcaagaggtgaaattgcctcgaagtccc
ttagatgctcctccactgtccctggttagctctacaaacaccaatggaggtaacagtttg
aatccgctggaagtcaaagaaaaggagaacaaactgaatttttcttctggagaagccaag
cccaaatctaagatggcagacttatctgacggtagtgatcttgaagacgttaacaccaca
agcgggacagatttggagaccaccactggtacagcctccggtgatggttctgacctggag
agcgacggagagagtgaacgtgagcgaagtggtaaaagaaggaagccgtccgccatttca
agtcaagaaggccaccagttagaagacacagacagtgcattgataacagctgtgtctagt
tctgggaacttttctgttgagcgtccctttcagttttctgcatcatcccagcactccttc
ttccccccgcccgatgagcaagctctcccgcccacccacacaaatgcaaatgcagccact
acagattccataaaagccatcgcgtctattgctgagaaatactttggtccaggtttgatt
gggctccatccggagaagaagatgggtccattgccctaccattccatgtttcccttccag
tttctgcccaatttccacaactccctctatcccttcgccgctgatcgaagtgccctcaat
cccggcatgttctttaaggcggagccaaagtcacctcacgagcaactgcacaagatggtg
tcgggtggaccacgagctcctgctcccacagcagagtccccatttgatctcaccacaaag
gccaaggagcccaagtcaggtcatcctactccagcaaacccctcaaaccccaaaagtagt
accgggagcagcagtggacctttggcaacacctagcggtgaagaacagccgttggacctg
agcattggcggccggagccgaggtggccacaacggtgtggtggctgagccacaaaataga
aagaaccacatctttggagttggaaagggggtctccgtcaaggacgaaaccccagctggg
tttccacagcatcattcccagtcgttgcaccattcagccattgcccagcaccagcagcaa
cacgcacagcaacaccagccgccacccctacactacgccaagccctcagcgttcttcatg
gacccaatatacagcagggtggagaagaggaagctactcgaccccgtaggagctctgaag
gaaaaattcctcaggccctccccgccactcttccatccacagatgtcagctatggagaac
atgacggagaagctcgagagcttcggtgctctgaaactggacgcgccgcccaattcgctg
caacacgctcatccactgttcaatttccgctcaccaccaccgtccctctccgacgccatc
ctccgcaagggcaaggagcgttactcctgcaggtactgtgggaaaatcttccctcgctcg
gcaaacctcaccagacacttgcggacacatacaggggaacaaccctacaggtgtaaatac
tgtgaccgctcattcagcatctcatccaatcttcaacgccacgttcgcaacatccacaac
aaggaaaaacccttcaagtgtcacctgtgcaaccgctgcttcggtcaacaaaccaacctc
gaccgccatctcaagaagcacgagcatgagaacatacctgtgagccagcagtctgggatg
ctttccaacctaggaaccaccatctcctccccgaactccgagccagacaatcatgcactt
ttagatgagaaggaggactcctacttctcagaaatccgcaatttcatttccaacaatgag
atgaaccaggcctccagctccacggataagagatcaggacaggctgaggaggaacttcca
ccgagccacagtttgtccaactccaagctcgggcaccgggggcttgaggaagaggaagag
gaagtggagggcgacgatgaggaggaagaggaaggcagcctgacagagaaatctcacgat
gaggcgcccgagtccccgtctctcgtcacaacgggagtgtatgaggaggacgaggaggag
gaagagacggaggcggctccgctgcctatgggctacgaacacactcgcaggtgtatagag
gagggctctctcctggacctggagggtctgccaagctttcccaagagtctggacgggtta
cgtaaagcagccagtgatgagcaaccctttgatgttaaagacatatttaacacttcacta
gagtcggaggcattgaaagagacattgtacaggcaggctaaaacccaggcttatgcaatg
atgctgtccctctcggagaacaaccctttgcacgcgccctcccagaactccctggacgcc
tggctgagcatgggaggtggaccgtctgagaccggcggctttcacccgctcaaccacatg
tag
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